Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0305
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     120   2e-29
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         111   8e-27
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      38   7e-05
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              27   0.23 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  120 bits (288), Expect = 2e-29
 Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
 Frame = +2

Query: 131 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAEXL-MQAHKLVLSVCSPYFQEM 307
           M   + F L WNN+ +++++ F  L    D VDVTLA +   ++AH++VLS CSPYF+E+
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFREL 60

Query: 308 FKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGXXGNQN 487
            K  P +HP++ L+DV+ S L  L++F+Y GEVNV Q  L+SF+ TAE L+V G    Q 
Sbjct: 61  LKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGL--TQQ 118

Query: 488 EESSTPSNQSRLRGQAPG 541
            + +     S +R  A G
Sbjct: 119 ADQTDRDELSHVRALAAG 136


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  111 bits (266), Expect = 8e-27
 Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 2/135 (1%)
 Frame = +2

Query: 143 EQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAA-EXLMQAHKLVLSVCSPYFQEMFKMN 319
           + + L WNN+ +NM++ FH LL     VDVTLA  E  ++AHK+VLS CS YFQ++   N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 320 PTQHPIVFL-KDVSHSALRDLLQFMYQGEVNVKQEELASFISTAEQLQVKGXXGNQNEES 496
           P +HP + + +DV  + L+ +++F+Y+GE++V Q EL S + TA+QL++KG         
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128

Query: 497 STPSNQSRLRGQAPG 541
             PS       + PG
Sbjct: 129 GPPSVSLSSPPREPG 143


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 131 MASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTLAAE 247
           M   + F L WNN+ +++++ F  L    D VDVTLA E
Sbjct: 1   MVDTQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 377 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGXXGNQNEESS 499
           ++  +Y G VNV+ E + S++    ++  V    GN NE+++
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEKNT 84


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 495 LSSF*LPXKPLT*SCSAVLINDANSSCLTLTSP 397
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 107 VPRRVVAIMASDEQFSLCWNNFHANMSAGFHGLLSRGDLVDVTL 238
           V R +VA++ +   F +CW  FHA      +   S+    DV +
Sbjct: 283 VIRMLVAVVVA---FFICWAPFHAQRLLAVYAQNSKDKPEDVLI 323


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 108 FHVESSLSWRRTNNFHY 158
           +   +S SWR TNN  Y
Sbjct: 211 YDFRNSRSWRITNNLFY 227


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -3

Query: 557 CLCCDDL-GPG 528
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,024
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)