Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0303
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    28   1.5  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   2.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    27   3.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.7  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   6.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.2  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   8.2  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 442 IVEGDRYWHVSDWKHSAEDVSKANTSSRICLTATVIWRRQSTI 570
           ++E DR  H+SD+K  +   S    S   C+  TV W+   TI
Sbjct: 209 LMEADREQHISDYKCDSCFKSSPKHSKTSCI-RTVDWKNPPTI 250


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 498 RLQSEYQFQNLFNGNRDLAKTIHDFANSNWREIFQEVA 611
           R+ SE Q   L NG++++    +   N  WR +  E A
Sbjct: 57  RMASEIQLHKLCNGHKNIIHFYNTAENPQWRWVVLEFA 94


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 439 SPPRLELSSL*CPGF*SCT---FRCLRWVVSVVGHPTCIHQPVS 317
           +PP L L S+    F  C+    R + W+V V+G P  I+  VS
Sbjct: 57  TPPGLYLVSVALSPFIGCSNVSLRLINWLVGVIGLPWLINDIVS 100


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 465 ARQRLEAQRRGRLQSEYQFQNLFNGNR-DLAKTIHD-FANSN-WREIFQEVAPPM 620
           A+Q+ E +   + + +   + L N N  D+  T+     N N W++IF E APP+
Sbjct: 404 AKQKEEKEETNKTE-DVSIEVLDNNNESDIGLTVKKKVENGNAWKQIFSERAPPL 457


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 340 TCIHQPVSQSTSDLEGSCRVTASNLKLHSP*ASDGRVSKIHVQASL 203
           T    P S STS   G+  +TAS++   +   S    + IH Q S+
Sbjct: 73  TSSSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQQVSV 118


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 468 RQRLEAQRRGRLQSEYQFQNLFNGNRDLAKTIHDFANSNWREI 596
           +QR E + R RLQ E +FQ     +R+ A  IH   N+   ++
Sbjct: 299 KQRKEFENRQRLQKEKEFQK----SREAALKIHASRNTTETQV 337


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 668 EQFE-CFVNYLGDDSLDHGRSHLLKDFPPVAVREIVDCLRQITVAVK 531
           E+F+   + YLG    D   SHLL    P  +R++ + L QI   +K
Sbjct: 796 EEFQHALMRYLGKTDDDEDNSHLLVHHIPTIIRKL-EQLEQIVRFLK 841


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 593 FPPVAVREIVDCLRQITVAVKQILELVFALETSSAL 486
           + P+ V  + DCL  +TV+  Q+L  +  + T+  +
Sbjct: 400 YQPIGVCSVEDCLILVTVSDIQVLRSLTGVSTAKTI 435


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 430 VEERIVEGDRYWHVSDWKHSAEDVSK 507
           VEE +   D YW   DW+   E + +
Sbjct: 28  VEEHLRLNDCYWDTHDWRKCTEQMEE 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,421
Number of Sequences: 5004
Number of extensions: 58215
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)