Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0303
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)               31   1.2  
SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)                30   1.6  
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)           30   2.2  
SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)                   29   5.0  
SB_53744| Best HMM Match : Spectrin (HMM E-Value=1.8e-28)              28   6.6  
SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
          Length = 821

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 218 CASQPGRCSPGPRSSDP 168
           CA +PG+C PGP   DP
Sbjct: 749 CAEKPGQCPPGPVGGDP 765


>SB_44176| Best HMM Match : PAP_assoc (HMM E-Value=0.56)
          Length = 579

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 488 LCFQSLTC-QYLSPSTILSSTSRIIFIMMSRILILYFPVPSMGSISSWPPNVYSP 327
           L  Q LT    LSP T++  T++ + I+   IL   F     G I   PPN Y+P
Sbjct: 161 LAAQKLTILDALSP-TLIPHTTKYVPILNKHILSKVFDQVIQGQIIPTPPNTYTP 214


>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
          Length = 796

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -3

Query: 380 PVPSMGSIS-SWPPNVY-SPTSVTEHFRSRRVLSCNRLKFKTTQSLGL*RSCL*NPCASQ 207
           P P + ++  S P   + S T +TE  + R  +SCN L  ++  S    R+C     A++
Sbjct: 412 PRPDLNTLDESKPEGAWQSGTDLTEQRKKRHFMSCNTLSLRSLASRRDARACARAEDAAR 471

Query: 206 ----PGRCSPGPRSSDPW 165
               P   +P P S+  W
Sbjct: 472 SAGTPSAHTPVPESNSAW 489


>SB_38459| Best HMM Match : DUF948 (HMM E-Value=0.63)
          Length = 276

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -3

Query: 581 AVREIVDCLRQITVAVKQILELVFALETSSALCFQSLTCQYL-SPSTILSSTSRII 417
           +VR+++  +RQ+  +V+Q+L+ V  +  S     QS+ CQ L S   +L S  +++
Sbjct: 165 SVRQVLQSVRQVLQSVRQVLQSVRQVLQSVRQVLQSV-CQVLQSVRQVLQSVRQVL 219



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = -3

Query: 581 AVREIVDCLRQITVAVKQILELVFALETSSALCFQSLTCQYLSPSTILSSTSRIIFIM 408
           +VR+++  +RQ+  +V+Q+L+ V  +  S     QS+     S   +L S  +++ I+
Sbjct: 172 SVRQVLQSVRQVLQSVRQVLQSVRQVLQSVCQVLQSVRQVLQSVRQVLQSVCQVLQIV 229


>SB_53744| Best HMM Match : Spectrin (HMM E-Value=1.8e-28)
          Length = 140

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 483 AQRRGRLQSEYQFQNLFNGNRDLAKTIH 566
           A R+G+L   Y +Q   N  RDL   IH
Sbjct: 21  AARKGKLLDSYDYQRFLNEFRDLISWIH 48


>SB_16978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 92  ACLKSSAQKAVPFLAAGIADLGIETMDPMTVGRV 193
           AC++S+A  A+P L +G+ +   + + P  +G +
Sbjct: 683 ACVESAASGAMPSLGSGLCERQCKNLIPFLIGAI 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,454,020
Number of Sequences: 59808
Number of extensions: 467277
Number of successful extensions: 1441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)