Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0303
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein si...    30   1.3  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    30   1.8  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    30   1.8  
At3g51240.1 68416.m05609 naringenin 3-dioxygenase / flavanone 3-...    29   4.1  
At5g59260.1 68418.m07426 lectin protein kinase, putative similar...    28   5.4  
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin...    28   5.4  
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin...    28   5.4  
At2g38820.2 68415.m04769 expressed protein contains Pfam profile...    28   5.4  
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    28   7.1  
At4g25710.1 68417.m03701 kelch repeat-containing F-box family pr...    28   7.1  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    27   9.4  

>At3g49350.1 68416.m05395 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 554

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 239 RSCL*NPCASQPGRCSPGPRSSDPWFQYRDRRFPLR 132
           RS L    +S P  CS  PR   PW + R R+ PLR
Sbjct: 36  RSALFVVASSSPASCSDRPRLKSPWSR-RKRKRPLR 70


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 620  HGRSHLLKDFPPVAVREIVDCLRQITVAVKQILELVFALETS 495
            +GRS LL   PP+  R +++ L  +      + +++F  ++S
Sbjct: 2849 YGRSQLLNGLPPLVFRRVLEVLTYLATNHSAVADMLFYFDSS 2890


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 620  HGRSHLLKDFPPVAVREIVDCLRQITVAVKQILELVFALETS 495
            +GRS LL   PP+  R +++ L  +      + +++F  ++S
Sbjct: 3076 YGRSQLLNGLPPLVFRRVLEVLTYLATNHSAVADMLFYFDSS 3117


>At3g51240.1 68416.m05609 naringenin 3-dioxygenase / flavanone
           3-hydroxylase (F3H) identical to GI:3790548
          Length = 358

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 401 RILILYFPVPSMG-SISSWPPNVYSPTSVTEHFRSRRV-LSCNRLKFKTTQSLGL*RSCL 228
           R ++ YF  P      S WP        VTE +  R + L+C  L+   ++++GL +  L
Sbjct: 128 REIVTYFSYPVRNRDYSRWPDKPEGWVKVTEEYSERLMSLACKLLEV-LSEAMGLEKESL 186

Query: 227 *NPC 216
            N C
Sbjct: 187 TNAC 190


>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 674

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 119 AVPFLAAGIADLGIETMDPMTVGRVNTVQAGLHMDFRDTTV 241
           +VP ++ G   LGI  +   TV ++ T  +  +  F D TV
Sbjct: 629 SVPAISFGTVALGIPNISHETVTQMTTTSSSANFSFEDVTV 669


>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 478

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 587 AGNLSGGGSSHGQGYRLQDNSRNIQ 661
           AG   GGG +HG G  +Q N + IQ
Sbjct: 20  AGGGGGGGQNHGHGQPMQLNPQQIQ 44


>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
           protein similar to farnesylated protein 1 (GI:23304411)
           {Hordeum vulgare subsp. spontaneum}; contains Pfam
           profile PF00403: Heavy-metal-associated domain
          Length = 577

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 587 AGNLSGGGSSHGQGYRLQDNSRNIQ 661
           AG   GGG +HG G  +Q N + IQ
Sbjct: 119 AGGGGGGGQNHGHGQPMQLNPQQIQ 143


>At2g38820.2 68415.m04769 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 2   VLCFLFACAFVASDATDLAKFITPCRPKDTACLKSSAQKAV 124
           VLC       + +D T +A+    C+ KD +CLKS A   V
Sbjct: 128 VLCKSIRVRNLLTDVTKIAETSKNCKLKDGSCLKSVANGLV 168


>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 DDRGPGEHRPGWLAHG 222
           DD GP E RPG L HG
Sbjct: 159 DDGGPNESRPGVLRHG 174


>At4g25710.1 68417.m03701 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 390

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -3

Query: 458 LSPSTILSSTSRIIFIMMSRILILYFPVPSMGSIS----SWPPNVYSPTSVTEHFRSRRV 291
           +S +T  S    ++ ++++R+ ILY+P+ S+ S S       P +Y   S+     SR  
Sbjct: 22  VSSTTNPSLPDDLVLVIIARVSILYYPILSLVSKSFRSLLASPELYKVRSLLGRRESRLY 81

Query: 290 LSCNRLKFKTTQS 252
           +  N   +K   S
Sbjct: 82  VCINMYSYKNGPS 94


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 342 GWPTTDTTHRRH---RKVQDQNPGHHNED 419
           G  TTD  H +     K++D+ PGHHN +
Sbjct: 155 GPATTDQPHEKKGILEKIKDKLPGHHNHN 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,011
Number of Sequences: 28952
Number of extensions: 325686
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)