Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0302
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    57   2e-09
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    56   3e-09
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    51   1e-07
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    42   5e-05
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    38   6e-04
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    35   0.005
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    33   0.016
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    31   0.088
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   0.62 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   2.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   4.4  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   4.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.6  

>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 419
           V R+DI++T+KLW   H    V +A+  +LK L LDY+D YL+HWP+
Sbjct: 75  VPRKDIWVTSKLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPV 121



 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 76  NGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIXEXV 255
           +G  +P +GLGT+         +S+  Q ++ V  A+  GYRH D A++Y  E E+ + +
Sbjct: 20  DGSKIPGLGLGTW---------RSEPNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGDGI 70

Query: 256 R 258
           +
Sbjct: 71  K 71


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIGL 425
           V R DI++T+KLW   HR   V  A+  +L+ L L+YID YL+HWP  L
Sbjct: 74  VPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFAL 122



 Score = 46.4 bits (105), Expect = 2e-06
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +1

Query: 76  NGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIXEXV 255
           NG  +P+IGLGT+         +S   + ++ V  A+  GYRH DTA +Y  E+EI E +
Sbjct: 19  NGDKIPSIGLGTW---------RSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIGEGI 69

Query: 256 R 258
           R
Sbjct: 70  R 70


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 419
           V R  +FIT+K+    H    + +A+N+SL+KLG DY+DLYL+H PI
Sbjct: 69  VPRSKLFITSKV---MHNVDNIPEALNESLRKLGTDYLDLYLLHSPI 112



 Score = 35.9 bits (79), Expect = 0.003
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 88  MPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEI 243
           +PA G+GT L   + G +   ++ + D V  A+  G+ H D A VY  E+E+
Sbjct: 12  VPAYGVGTALFKKEKGEI---NRTIVDSVKNALAAGFIHIDCAEVYGNEEEV 60


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 21/47 (44%), Positives = 33/47 (70%)
 Frame = +3

Query: 282 KREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIG 422
           KREDI+ T+KL +    ++ ++ +I+ S+K  GL YIDL+L+H P G
Sbjct: 70  KREDIWFTSKLNDLSGYKSTLS-SIDASVKACGLGYIDLFLLHSPYG 115



 Score = 33.9 bits (74), Expect = 0.012
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 64  LKMNNGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQE 240
           +K+NNG   P    G+Y+      V ++K     D V  A+  GYRH D+A +Y  E +
Sbjct: 6   VKLNNGLKCPQFAYGSYM------VNRTK---CFDSVYAALQCGYRHIDSAQMYHNEAD 55


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 22/64 (34%), Positives = 33/64 (51%)
 Frame = +1

Query: 43  STMEVPSLKMNNGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASV 222
           S  E  ++ + NG  +P IG G ++          K  +   +V +A+D GYRH DTA+V
Sbjct: 4   SQTESTTVTLTNGMVIPRIGFGAFM---------LKYNECYGLVTQALDSGYRHIDTAAV 54

Query: 223 YETE 234
           Y  E
Sbjct: 55  YGNE 58



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 24/48 (50%), Positives = 29/48 (60%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPIG 422
           VKR DIF+T+KL N     +  A AI  SL  LG  YIDL+L+  P G
Sbjct: 74  VKRTDIFLTSKLANCSDYYSTRA-AIRSSLHHLG-TYIDLFLIQSPAG 119


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 306 TKLWNTQH-RRTEVAQAINDSLKKLGLDYIDLYLMHWP 416
           TKL NT    R  + + +N SLK+LGL Y+D+ + H P
Sbjct: 102 TKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIMAHRP 139


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 33.5 bits (73), Expect = 0.016
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMH---WPI 419
           +KREDI + TK+ ++        +A+  SL++ G   +D+ L+H   WP+
Sbjct: 67  IKREDITLITKIPDSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPV 116


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 31.1 bits (67), Expect = 0.088
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 10/53 (18%)
 Frame = +3

Query: 282 KREDIFITTKLWNTQHRRTE----------VAQAINDSLKKLGLDYIDLYLMH 410
           +R++IF+ TK    ++  T           + +A++ SLK+LG+D IDLY +H
Sbjct: 74  RRKEIFLATKFGYEKNPETGELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVH 126


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 306 TKLWNTQHRRTEVAQ-AINDSLKKLGLDYIDLYLMHW 413
           +K + T +RR+E+ Q  +++  KKL    +D+Y +HW
Sbjct: 125 SKEYLTAYRRSELLQNKLHEYQKKLITRVLDMYQLHW 161


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 306 TKLWNTQHRRTEVAQAINDSLKKLGLDYID 395
           TK+WN  H+  E  + ++D++++  L  +D
Sbjct: 680 TKIWNCVHQLLEREKKMSDAMRQTKLTIVD 709


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 432  RHLIQWASASNKDLYNPDLVSSV 364
            +HL +W S+S   LY+P L S V
Sbjct: 1780 QHLARWISSSKSYLYSPLLSSHV 1802


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 444 NDYNRHLIQWASASNKDL 391
           NDYN+ L +W +  N DL
Sbjct: 57  NDYNKRLDEWITIDNIDL 74


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 323 PAPEN*SSPSYKRFTEETRSGLYRS 397
           P PE   SP Y  F +++ S +Y S
Sbjct: 113 PPPEQLDSPCYPHFDQDSSSVIYPS 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,432
Number of Sequences: 5004
Number of extensions: 27007
Number of successful extensions: 87
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)