Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0302
         (468 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   9e-14
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 59   2e-09
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                50   1e-06
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.007
SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)              35   0.039
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)             33   0.089
SB_29198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 73.3 bits (172), Expect = 9e-14
 Identities = 30/48 (62%), Positives = 39/48 (81%)
 Frame = +3

Query: 276 VVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 419
           VV+R+D+FIT+KLWNT+H   +V     DSLK LGLDY+DLYL+HWP+
Sbjct: 65  VVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPL 112



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 27/66 (40%), Positives = 39/66 (59%)
 Frame = +1

Query: 61  SLKMNNGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQE 240
           ++K+NNG +MP +GLGT+         KSK  Q+ + V  AI  GYRH D A  Y  E+E
Sbjct: 3   TVKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKE 53

Query: 241 IXEXVR 258
           + + +R
Sbjct: 54  VGDALR 59


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +3

Query: 273 GVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 419
           G VKRE++F+T+KLW   H   +V  A   +LK L LDY+DLYL+H P+
Sbjct: 105 GKVKREELFVTSKLWCDSHHPDDVLPACQATLKNLQLDYLDLYLIHIPV 153



 Score = 35.5 bits (78), Expect = 0.022
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 142 KSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIXE 249
           +S  +++ + V  AI++GYRH D A +Y  E EI E
Sbjct: 61  QSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGE 96


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 32/47 (68%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 419
           + R +I++ TK++ T+H   E   A   SL +LGL Y+DLYL+H+P+
Sbjct: 124 IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPV 170



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 24/63 (38%), Positives = 33/63 (52%)
 Frame = +1

Query: 70  MNNGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIXE 249
           MN+GR +P +GLG +            D   +  V+ A++ GYR  DTAS Y  EQ + E
Sbjct: 70  MNDGRKIPLLGLGAH------------DIHSKQAVLWALESGYRLIDTASRYHNEQSVGE 117

Query: 250 XVR 258
            VR
Sbjct: 118 AVR 120


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 19/46 (41%), Positives = 32/46 (69%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWP 416
           +KREDI++TTKL  ++   +   +   +S+KKL + Y+DL+L+H P
Sbjct: 82  LKREDIYVTTKLKPSEEGHSNALKYAKESIKKLDIGYVDLFLIHTP 127



 Score = 33.9 bits (74), Expect = 0.068
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 166 DVVMRAIDVGYRHFDTASVYETEQEIXEXVR 258
           DV + A+  GYR  DTA +Y+ E+E+   VR
Sbjct: 48  DVCLFALKNGYRMLDTADIYQNEKEVGSAVR 78


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 279 VKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMH 410
           + R+DIFI TKL           +++  SL+ L  DYIDL+L+H
Sbjct: 388 IPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIH 431



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 76  NGRDMPAIGLGTY-LGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVY 225
           +G  MP +G GT  LG D   VVK+           A++ GYR  DTA  Y
Sbjct: 333 SGYTMPVMGFGTATLGEDTLSVVKT-----------ALETGYRLIDTAQGY 372


>SB_33699| Best HMM Match : Aldo_ket_red (HMM E-Value=3.1)
          Length = 93

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +1

Query: 70  MNNGRDMPAIGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASVYETEQEIXE 249
           +++G  +P  GLG Y            +K  +  V+ A++ GYR  DTA+ Y  E+ + E
Sbjct: 3   LSDGYKIPRFGLGLY---------DLDEKHTKQAVLWALENGYRMIDTAASYNNEKRVGE 53

Query: 250 XVR 258
            +R
Sbjct: 54  ALR 56


>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
          Length = 195

 Score = 33.5 bits (73), Expect = 0.089
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +3

Query: 363 SLKKLGLDYIDLYLMHW 413
           SL++LG+D IDLYL+HW
Sbjct: 51  SLERLGIDRIDLYLLHW 67


>SB_29198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 97  IGLGTYLGXDQNGVVKSKDKQLRDVVMRAIDVGYRHFDTASV--YETEQEIXEXVR 258
           +GLGT +   Q+ V++   ++L+    R+++ G+R      +     E+++ E VR
Sbjct: 15  VGLGTGIADSQSDVLRVTPRRLKPSNDRSVETGFRTMCRRPIPMAHAERQVNELVR 70


>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 357 NDSLKKLGLDYIDLYLMHWPIGLNADYS 440
           +D +K   +   D Y+ HW +GL  DY+
Sbjct: 173 DDYIKHWEMGLTDDYIKHWEMGLTDDYT 200



 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 357 NDSLKKLGLDYIDLYLMHWPIGLNADYS 440
           +D +K   +   D Y+ HW +GL  DY+
Sbjct: 233 DDYIKHWEMGLTDDYIKHWEMGLTDDYT 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,629
Number of Sequences: 59808
Number of extensions: 216969
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)