Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0301
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.5  

>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 250 AVQTTYIPLQANYIYYKSWRTADK 179
           + +TT IP++   + Y+ W+T DK
Sbjct: 162 SAETTCIPIELVGLRYRGWKTNDK 185


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 349 LQSKTDMNNTVSTCRKTITIYPRFFLFFNSLNRAVQTTYIPLQANYIYYKS 197
           L  K    N +S  RKT +     F FF +     Q+  +PL A Y++  S
Sbjct: 484 LPMKLKETNAISYYRKTCSSCKYPFQFFINKLPFYQSPSLPLSATYVWIAS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,153
Number of Sequences: 5004
Number of extensions: 44071
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)