Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0301
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    29   4.3  
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110...    28   7.5  
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811...    27   9.9  
01_06_1621 - 38705629-38705691,38706074-38706211,38706462-387068...    27   9.9  

>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 218 SLQRYVCSLDSPV*RIKKEKESWVNCNCFTTSTDCIIHIRFRLQ 349
           +L+++V   D+ + R K EKE+  +C  F  +  CI H  F  Q
Sbjct: 333 TLKQFVEQYDNAL-RDKVEKENKSDCKSFQEAIPCITHYEFERQ 375


>03_05_0788 +
           27709563-27709832,27710101-27710887,27710947-27711086,
           27712209-27712442,27712782-27712847
          Length = 498

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 286 PRFFLFFNSLNRAVQTTYIPLQAN 215
           PRF+ +FN    A+  T+IP+Q +
Sbjct: 268 PRFYPYFNDCIAAIDGTHIPIQVS 291


>09_04_0689 -
           19480409-19480599,19480780-19480889,19481032-19481117,
           19481410-19481523,19481697-19482066,19482216-19482346,
           19482628-19482736,19482901-19483022,19483113-19483219,
           19483447-19483551,19483654-19483812,19484071-19484126,
           19484200-19484251,19486724-19486821,19487086-19487210
          Length = 644

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 515 YESVSVMFDKWCDYVNVQEC 456
           +E ++ MFD WC ++ V++C
Sbjct: 87  HERLAKMFDMWCLHIPVEDC 106


>01_06_1621 -
           38705629-38705691,38706074-38706211,38706462-38706850,
           38707012-38707126,38707394-38707711
          Length = 340

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 286 PRFFLFFNSLNRAVQTTYIPLQANYIYYKSWR 191
           PRF+ +FN    A+  T+IP+Q   ++  +W+
Sbjct: 253 PRFYPYFNDCIGAIDGTHIPVQ---VFAAAWK 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,466
Number of Sequences: 37544
Number of extensions: 242030
Number of successful extensions: 385
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)