Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0301
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_49832| Best HMM Match : CXCXC (HMM E-Value=0.00036)                 28   7.6  

>SB_20350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 462 LNIYIITPLIKHNTHTFILKHSDTSQAHTH 551
           +N +  T LIKH   T ++KHS+T+    H
Sbjct: 71  INFFYATNLIKHPDATNLIKHSNTTNLIKH 100


>SB_49832| Best HMM Match : CXCXC (HMM E-Value=0.00036)
          Length = 242

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 209 NIISLQRYVCSLDS---PV*RIKKEKESWVNCNCFTTSTDCIIHIRF 340
           NI S + +V  LD     + R+K    +  NC C T+  DC  H RF
Sbjct: 70  NISSEEVFVDVLDEITLSMVRLKMYNHTKCNCGCTTSPMDCSQHQRF 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,603,450
Number of Sequences: 59808
Number of extensions: 309837
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)