Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0301
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa...    27   8.2  
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa...    27   8.2  

>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 353 RKSNVAST-WPSMNVAY*SNVGRRPTDVISMVRPAYILEHLHNHTTYQT*HSHFHIKTQ* 529
           R+ N+ S  WP  + +  S   RR T+  +         H H+H   Q  H H H + Q 
Sbjct: 254 RRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEG----HYHHHQQQQQQHQHQHQQQQS 309

Query: 530 H 532
           H
Sbjct: 310 H 310


>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 353 RKSNVAST-WPSMNVAY*SNVGRRPTDVISMVRPAYILEHLHNHTTYQT*HSHFHIKTQ* 529
           R+ N+ S  WP  + +  S   RR T+  +         H H+H   Q  H H H + Q 
Sbjct: 254 RRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEG----HYHHHQQQQQQHQHQHQQQQS 309

Query: 530 H 532
           H
Sbjct: 310 H 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,098,947
Number of Sequences: 28952
Number of extensions: 213206
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)