Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0300
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   0.64 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   6.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   7.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -3

Query: 383 FIFFILYPFTFSFSILRISNFSSPFILIF--FLDLHTMLF*TVTMLFVYVSLILVIS 219
           F FF+L+  +FSFS   +   S  FI+ F  F  LH  LF     + V++S +  +S
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILH-FLFFFFLCVCVFLSFLFSLS 174


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 380 IFFILYPFTFSFSILRISNFSSP 312
           + F  Y   +SF+ +RIS+F SP
Sbjct: 563 LIFTSYVLIYSFASIRISSFYSP 585


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 199  EDLSNGQDITRIKET*TKSIVTV*NSIVWRSRKKIKIKGEEKLDIRKIEKLNVK 360
            + L +GQDI+ IK+T   ++ T   SI  +S K  ++  +E ++  ++   NVK
Sbjct: 4366 KQLQDGQDISDIKQTGEDTLPTEFGSIN-QSEKVFELSEDEDIE-DELPDYNVK 4417


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 372  YSIPLYVQFLYFTDIQFLFAFYLNLLSG 289
            ++ PLY  FL    I  + +F L+LLSG
Sbjct: 941  FTWPLYTIFLSLGQILSISSFQLSLLSG 968


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -3

Query: 407  FSYHRLS--NFIFFILYPFTFSFSILRISNFSSPFILIFFLDLHTMLF*TVTMLFVYVSL 234
            FS+  LS  N     L+ F+FSF +  +   +S      F   H M++      F+   +
Sbjct: 833  FSFEPLSKKNRFLINLFRFSFSFILYNLLISTSTVFFAGFFRRHLMVWKVFAPRFMLSGI 892

Query: 233  ILV 225
            +LV
Sbjct: 893  LLV 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,740
Number of Sequences: 5004
Number of extensions: 22670
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)