Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0300
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18657| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31)                 29   1.5  

>SB_18657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 16/68 (23%), Positives = 34/68 (50%)
 Frame = -3

Query: 407 FSYHRLSNFIFFILYPFTFSFSILRISNFSSPFILIFFLDLHTMLF*TVTMLFVYVSLIL 228
           F YH+L + + F L   + + + L+ +     + +  F+D    LF T  +L  + S+++
Sbjct: 108 FQYHQLRDLLRFCLGECSVTLNPLKGNTSCIGYSMAMFMDAEERLFPTPALLNTFSSMLI 167

Query: 227 VISCPLLK 204
           V+    +K
Sbjct: 168 VLRSTTVK 175


>SB_43636| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-31)
          Length = 355

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = -2

Query: 366 IPLYVQFLYFTDIQFL-----FAFYLNLLSGPPHDAVLDCDYAFCLCFFNSRYIL 217
           I L++  L  TD+  L     FAF + +L   P+   +   Y FC+ FF S  +L
Sbjct: 60  IYLFIGALALTDVSLLATYPFFAFPVTVLGKWPYSDFVCQSYGFCILFFASASLL 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,513,667
Number of Sequences: 59808
Number of extensions: 149711
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)