Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0300
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family...    30   0.69 
At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family...    29   1.2  
At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   3.7  
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si...    27   6.4  
At1g53200.1 68414.m06030 expressed protein                             26   8.5  

>At3g20270.2 68416.m02568 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 515

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 332 ISNFSSPFILIFFLDLHTMLF*TVTMLFVYVSLILVIS 219
           ++ FS P  L FFL++  M   T+ +LFV VS  L  S
Sbjct: 24  LAKFSYPSTLFFFLEMALMKVMTILVLFVSVSSTLAQS 61


>At3g20270.1 68416.m02567 lipid-binding serum glycoprotein family
           protein similar to SP|P17213 Bactericidal
           permeability-increasing protein precursor (BPI) {Homo
           sapiens}; contains Pfam profile PF02886: LBP / BPI /
           CETP family, C-terminal domain
          Length = 722

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 332 ISNFSSPFILIFFLDLHTMLF*TVTMLFVYVSLILVIS 219
           I  FS P  L FFL++  M   T+ +LFV VS  L  S
Sbjct: 231 IPYFSYPSTLFFFLEMALMKVMTILVLFVSVSSTLAQS 268


>At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to SP|P10967
           1-aminocyclopropane-1-carboxylate oxidase homolog
           (Protein E8) {Lycopersicon esculentum},
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 357

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 327 QFLFAFYLNLLSGPPHDAVLDCDYA 253
           +FLF  Y+N   G PHD     D+A
Sbjct: 330 EFLFQDYMNNFFGQPHDGKKSLDFA 354


>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
           similar to 17.9 kDa heat-shock protein [Helianthus
           annuus] GI:11990130; contains Pfam profile PF00011:
           Hsp20/alpha crystallin family; supporting cDNA
           gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
           small heat shock-like protein (RTM2) GI:7407072, small
           heat shock-like protein [Arabidopsis thaliana]
           GI:7407073
          Length = 366

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/35 (34%), Positives = 25/35 (71%)
 Frame = +1

Query: 304 KIKGEEKLDIRKIEKLNVKGYRIKNMKLLKRW*LK 408
           +I+ +EKL+ RK+E+  ++  ++++MKL +   LK
Sbjct: 199 EIEAKEKLEERKLEERRLEERKLEDMKLAEEAKLK 233


>At1g53200.1 68414.m06030 expressed protein
          Length = 613

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 295 KKIKIKGEEKLDIRKIEKLNVKGYRIKNMKL 387
           +KIK++ EEK D  K+EK+  K  R+ + ++
Sbjct: 12  EKIKVETEEKTD--KLEKIKAKRRRVSSSEI 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,927,328
Number of Sequences: 28952
Number of extensions: 112653
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)