Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0299
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    28   0.59 
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   1.8  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    25   3.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   4.2  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   5.5  
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz...    24   9.7  

>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 130 EASTIFFHGSSASGIPSVVHAAYQIPPPSNLDAQGMTLPYSIL 2
           EAS   F    +  I SV+  A++  PPS  + + +T  + +L
Sbjct: 422 EASFTIFKAKLSKVIASVLDRAFRFTPPSYSEVEALTEQFKVL 464


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 75  TTLGIPEADDPWKKIVEASPPDSIWHSLRNC 167
           T  G+P  DD W+  +    PDS+    ++C
Sbjct: 255 TIPGLPMVDDYWQDQIMVKIPDSLGECTQDC 285


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +2

Query: 176 SGGGLAELDHKGHR*RHAAGRLQTGNLLRHTPTE 277
           +  G+A+ +++G +  H   R+Q+  +++ TPT+
Sbjct: 262 NANGVAQEENEGSQEAHFHSRIQSDTVIQSTPTK 295


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 31  ERQGCSAEVSGTRHVPHLEYLKRTTHGR 114
           +++    EVS   HVPH    +R  H R
Sbjct: 250 DKENGETEVSAKNHVPHRSSRRRRRHQR 277


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 84  GIPEAD-DPWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGI 215
           GI ++D +  KK +E S   S W S R+ +  Q  VW      G+
Sbjct: 577 GILQSDYEVAKKALEMSASCSYWSSARDRIRSQMVVWDKDAELGV 621


>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 90  PEADDPWKKIVEASPPD 140
           PEAD P KK++E + P+
Sbjct: 61  PEADVPVKKVLEVAVPN 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,998
Number of Sequences: 5004
Number of extensions: 32761
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)