Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0299
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96... 29 1.3
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 29 1.8
11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145 28 3.1
06_02_0068 + 11107493-11107653,11109116-11109218,11109311-111094... 27 5.4
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 27 5.4
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 27 5.4
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 26 9.4
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 26 9.4
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 26 9.4
>03_01_0123 +
965657-966214,967827-967995,968632-969236,969333-969434
Length = 477
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 284 RSLRWVCVAVDCQFEGGRLHD-VIDALCDQVLPDPRLIG 171
RS RW+CVA + + G + V+DAL D+++ D L G
Sbjct: 403 RSRRWMCVAEEERDVGAEVDGLVMDALVDELVADLALGG 441
>02_05_0385 -
28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 28.7 bits (61), Expect = 1.8
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 213 CPL*SSSARPPPDRQRSFLGNAIWNPVVKLLRFSSMGRPLQVFQVW 76
C L S AR P R+R +GN + N + + RF + G + QVW
Sbjct: 181 CQLCRSEARTPEWRRRGVIGNLVGNFMHYISRFLA-GFAIGFSQVW 225
>11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145
Length = 150
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 T*SGRPMEE-NRRSFTTGFHMAFPKKLRCLSGGGLAELDHKGHR*RHAAGRLQTGNLLRH 265
T GR M +RR+ G A K +SGG L +++ +G + + L T N+
Sbjct: 13 TSGGRSMAWCSRRAVAGGVRRAGSGKETAVSGGALLQVELRGRNCKDSGSLLFTPNISLS 72
Query: 266 TPTE 277
P+E
Sbjct: 73 NPSE 76
>06_02_0068 +
11107493-11107653,11109116-11109218,11109311-11109423,
11109502-11109624,11110165-11110266,11110367-11110532,
11111215-11111331,11111438-11111478,11111735-11111836,
11111924-11112140,11112271-11112498,11112580-11112707,
11112804-11112921,11113020-11113235,11113314-11113463,
11113553-11113629,11113973-11114190,11114443-11114656,
11114744-11114823,11114898-11115015,11115092-11115262,
11116124-11116292,11116404-11116447,11116620-11116662,
11116743-11116888,11118337-11118431,11118579-11119477,
11120540-11120638,11120907-11121002,11123447-11123568,
11123675-11123767,11123922-11124114
Length = 1653
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 263 HTPTEDCAKLMSELLKTHPVSVQEELTSYC 352
H P++D +ELL+ H S E+L S C
Sbjct: 756 HDPSQDELSFANELLEFHFQSALEDLVSIC 785
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 103 SSASGIPSVVHAAYQIPPPSNLDAQGMTLPYS 8
S++ GI V+ AY+I PP L Q +P S
Sbjct: 72 STSMGIQVVIKPAYRITPPPQLPPQLTEIPRS 103
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 63 YAACTTLGIPEADDPWKKIVEASPPD 140
YA CTT G+ + W +++++S P+
Sbjct: 862 YAPCTTQGLIQMFAQWSQVLQSSQPN 887
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 26.2 bits (55), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 60 WYAACTTLGIPEADDPWKK 116
W +C TL +P DPW K
Sbjct: 13 WNISCLTLSVPVILDPWFK 31
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 84 GIPEADDPWKKIVEASPPDSIWHSLRNCVAYQAG 185
G PEAD + + ASPP S+ H + +AG
Sbjct: 359 GSPEADLYMRSLNRASPPHSVVHQNSHAHVNRAG 392
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 145 MESGGEASTIFFHGSSASGIPSVVHAAYQIPPPSN 41
M+ G ++ ++ G S+ SV +A+Y PPP N
Sbjct: 119 MQPGPDSEIVYEEGQSSE---SVTNASYPRPPPDN 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,229
Number of Sequences: 37544
Number of extensions: 283466
Number of successful extensions: 756
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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