Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0299
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19534| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)               27   7.2  
SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    26   9.5  
SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_19534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 109 HGSSASGIPSVVHAAYQIPPPSNLDAQGMT 20
           H ++  GIPS+ HA      PS    QGMT
Sbjct: 77  HATTDDGIPSISHATMYDGIPSTRTRQGMT 106


>SB_11871| Best HMM Match : zf-C2H2 (HMM E-Value=1.3e-13)
          Length = 774

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 150 HSLRNCVAYQAGVWQNLITKGIDDVMQP 233
           H+ +NC AYQ     N+  +G+   MQP
Sbjct: 158 HAGKNCGAYQTPKPLNIANRGLSSHMQP 185


>SB_30475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 101 RPMEENRRS-FTTGFHMAFPKKLRCLSGGGLAELDH 205
           RP+  + R+ +T  FH     K+  LSG G+A++ H
Sbjct: 11  RPVFRSLRTRYTRNFHQCADLKMDKLSGFGIADVPH 46


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 24 MP*ASRLLGGGIWYAA 71
          +P  S++LGGG WYA+
Sbjct: 28 IPVRSKMLGGGAWYAS 43


>SB_16450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = -1

Query: 109 HGSSASGIPSVV---HAAYQIPPPSNLDAQGMTLP 14
           HG    G+P+ +   H AYQ  PPS +D     +P
Sbjct: 166 HGGEYRGVPTELPPLHTAYQPVPPSFMDRWNPHVP 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,530,364
Number of Sequences: 59808
Number of extensions: 285433
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)