Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0299
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical p...    29   1.2  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    27   6.3  
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co...    26   8.4  
AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    26   8.4  

>U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical
           protein F07C4.12b protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +3

Query: 81  LGIPEADDPWKKIVEASP-PDSIWHSLRNCVAY-----QAGVWQNLITKGIDDVMQPA 236
           LGIP A  P  ++    P P +IW   RNC  Y     Q+G +  +I    +D+   A
Sbjct: 40  LGIPYAKPPVGELRFKKPVPAAIWTETRNCTKYGPRCPQSGAFPEMINFQKEDIPDEA 97


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 105 PWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIYCDTHPP 275
           P  KIV   PP     SL   V     ++ N IT  +    Q +AF L I    +PP
Sbjct: 61  PRIKIVGIPPPPDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNPP 117


>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
           protein D2085.4 protein.
          Length = 1001

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 323 SVQEELTSYCVSLLXXDEARRCAC 394
           SV   L  YC  +L  +E RR AC
Sbjct: 335 SVNNHLKQYCEEMLISNEFRRAAC 358


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
           protein F28B3.1 protein.
          Length = 1539

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 162 NCVAYQAGVWQNLITKGIDDVMQPAAFKLAIYCDTHPPKTAL 287
           NC   +A  W   + + ID + Q   +  A+    H PKT L
Sbjct: 822 NCSEEEAFDWITRVLRAIDTIHQVGIYCCALVPANHLPKTPL 863


>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
           complex protein protein15 protein.
          Length = 1127

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 57  IWYAACTTL-GIPEADDPWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLI 203
           +++A C  L GI E    W+K   A P   IW +L    +    V + +I
Sbjct: 667 VFHAVCELLSGIKETIISWRKTKVAIPKFPIWWTLETFASCYRDVAEKII 716


>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 266 TPTEDCAKLMSELLKTHPVSVQEEL 340
           T  E   K+ SELL+ HP+S++ E+
Sbjct: 328 TTQEKINKMASELLEVHPMSLEFEI 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,664,270
Number of Sequences: 27780
Number of extensions: 202308
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)