Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0299
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.95 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.7  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 209 GHR*RHAAGRLQTGNLLR 262
           GHR RH+   L TGN  R
Sbjct: 192 GHRQRHSTIHLSTGNYSR 209


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 159 LGNAIWNPVVKLLRFSSMGRPL 94
           +G AI N  +   R+S++ RPL
Sbjct: 132 IGAAITNAAIAYDRYSTIARPL 153


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 162 FLGNAIWNPVVKLLRFSSMGRPLQVFQVW 76
           F+GN  + P+  L      G  L  F VW
Sbjct: 880 FIGNLTFLPLRSLEILRLSGNRLVTFPVW 908


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 72  CTTLGIPEADDPWKKIVEASPPD 140
           C   G P+    WKK    +P D
Sbjct: 700 CKADGFPKPQVTWKKAAGDTPGD 722


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 252 IYCDTHPPKTALN*CPSS*KRIRY 323
           I  D++P KTAL+ C S  +R  Y
Sbjct: 74  IEMDSNPIKTALSVCKSLIERQVY 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,890
Number of Sequences: 438
Number of extensions: 2518
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)