Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0299
         (394 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13330.1 68416.m01678 expressed protein                             29   1.5  
At2g01260.2 68415.m00039 expressed protein                             28   2.6  
At2g01260.1 68415.m00038 expressed protein                             28   2.6  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   3.4  
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py...    27   3.4  
At4g39230.1 68417.m05553 isoflavone reductase, putative similar ...    27   4.5  
At1g77855.1 68414.m09073 hypothetical protein                          27   4.5  
At5g46390.2 68418.m05710 peptidase S41 family protein similar to...    27   6.0  
At5g46390.1 68418.m05709 peptidase S41 family protein similar to...    27   6.0  
At3g20690.1 68416.m02618 F-box protein-related ontains weak hit ...    27   6.0  
At5g04670.1 68418.m00475 expressed protein BRL protein, Homo sap...    26   7.9  
At1g76740.1 68414.m08931 expressed protein weak similarity to fi...    26   7.9  
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ...    26   7.9  
At1g12140.1 68414.m01406 flavin-containing monooxygenase family ...    26   7.9  

>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 263 HTPTEDCAKLMSELLKTHPVSVQEELTSYCVSLLXXD 373
           H PT++  +  +ELL  H  S  ++L S C S +  D
Sbjct: 696 HVPTQEETQFANELLDLHLQSALDDLLSICQSNIHSD 732


>At2g01260.2 68415.m00039 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 75  TTLGIPEADDPWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQ---PAAFK 245
           T L    ADD + K+V       IW S     AY  GV   ++    D V+Q   P+   
Sbjct: 85  TLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGV-PLVLNNNKDRVIQYYVPSLSA 143

Query: 246 LAIYCDTHPPKTAL 287
           + IY  +H   ++L
Sbjct: 144 IQIYAHSHALDSSL 157


>At2g01260.1 68415.m00038 expressed protein
          Length = 369

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 75  TTLGIPEADDPWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQ---PAAFK 245
           T L    ADD + K+V       IW S     AY  GV   ++    D V+Q   P+   
Sbjct: 85  TLLRERRADDDYNKLVPYFVLGDIWDSFAEWSAYGTGV-PLVLNNNKDRVIQYYVPSLSA 143

Query: 246 LAIYCDTHPPKTAL 287
           + IY  +H   ++L
Sbjct: 144 IQIYAHSHALDSSL 157


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 229 CMTSSMPFVIKFCQTPA**ATQFLRECHMESG 134
           C+  S PFV+KF Q P       LR    +SG
Sbjct: 108 CLDKSWPFVLKFSQLPLDKREAILRNWSRQSG 139


>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 510

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +2

Query: 14  WECHALSVKVARRRYLVRGMYHTWNT-*SGRPMEENRRSFTTGFHMAFPKKLR-CLSGGG 187
           W C   +  VARR  + RG+     T  S R   ++    T  F + F KK   C +G  
Sbjct: 432 WSCSESAAHVARRGLIYRGIVPVMATGASARSSNKDSTEETIQFAIEFAKKKGICKTGDS 491

Query: 188 LAELDHK 208
           +  L HK
Sbjct: 492 IVAL-HK 497


>At4g39230.1 68417.m05553 isoflavone reductase, putative similar to
           allergenic isoflavone reductase-like protein Bet v
           6.0102 [Betula pendula][GI:10764491]; contains Pfam
           profile PF02716: Isoflavone reductase
          Length = 308

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 87  IPEADDPWKKIVEASPPDSIWHSLRNCVAYQAG 185
           +PE +   K+I+E+SPP ++  SL +CV  + G
Sbjct: 243 VPE-EQLLKQIIESSPPLNVMLSLCHCVFVKGG 274


>At1g77855.1 68414.m09073 hypothetical protein
          Length = 317

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +2

Query: 98  GRPMEENRRSFTTGFHMAFPKKLRCLSGGGLAELDHKGHR*R 223
           G  M E RRS T    +    + RC  GGG  E   KG R R
Sbjct: 233 GMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAVEKGLRER 274


>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 489

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 100 SASGIPSVVHAAYQIPPPSNLDAQGMT 20
           SA+  PS      ++PPPS  D  G+T
Sbjct: 12  SATSSPSTPQFIPELPPPSQFDYSGLT 38


>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
           C-terminal peptidase of the D1 protein [Hordeum vulgare
           subsp vulgare] GI:1296805; contains Pfam profiles
           PF03572: Peptidase family S41B, PF00595: PDZ domain
           (Also known as DHR or GLGF)
          Length = 428

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 100 SASGIPSVVHAAYQIPPPSNLDAQGMT 20
           SA+  PS      ++PPPS  D  G+T
Sbjct: 12  SATSSPSTPQFIPELPPPSQFDYSGLT 38


>At3g20690.1 68416.m02618 F-box protein-related ontains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 370

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 163 FLRECHMESGGEASTIFFHGSSASGIPSVVHAAY 62
           FL E ++    E   +FF+     G+ S VH AY
Sbjct: 303 FLTEGYLIYDEEKVVVFFNKEETEGLKSTVHIAY 336


>At5g04670.1 68418.m00475 expressed protein BRL protein, Homo
           sapiens, EMBL:AF005067
          Length = 766

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 233 RLHDVIDALCDQVLPDP-RLIGNAVS*G 153
           R HDV+D  CD VL +  +  GN VS G
Sbjct: 42  RAHDVVDRDCDSVLKNQNKSKGNKVSSG 69


>At1g76740.1 68414.m08931 expressed protein weak similarity to
           fimbriae-associated protein Fap1 (GI:3929312)
           [Streptococcus parasanguinis]; weak similarity to 1MDa_1
           protein (GI:24620455) [Caenorhabditis elegans]
          Length = 1532

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 239 LQTGNLLRHTPTEDCAKLMSELLKTHPVSVQEELTSYCVSLLXXDEAR 382
           +Q  NL  H    +C    S+++  HP  + E   S+CV L   DE +
Sbjct: 693 IQAENL--HGNFSECNTENSKVVIVHPEMLDEISVSHCVDLEMLDEVK 738


>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 391

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 242 QTGNLLRHTPTEDCAKLMSELLKTHPVSVQEEL 340
           QT N+  + P   C K +++  + H   +QEEL
Sbjct: 239 QTSNMEEYDPLTGCLKWLNKFGEYHSEQLQEEL 271


>At1g12140.1 68414.m01406 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase [Cavia porcellus]
           GI:191259; contains Pfam profile PF00743: Flavin-binding
           monooxygenase-like
          Length = 459

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 51  GGIWYAACTTLGIPEADDPWKKIVEASPPDSIWHSL-RNCVAYQ 179
           GG+W     +   P + DP + IV +S  DS+  +L R C+ Y+
Sbjct: 46  GGLWVYTPNSEPDPLSLDPNRTIVHSSVYDSLRTNLPRECMGYR 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,117
Number of Sequences: 28952
Number of extensions: 195092
Number of successful extensions: 545
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)