Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0298
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0617 + 21256745-21256943,21257454-21257647,21257836-212580...   104   8e-23
10_08_0603 - 19120434-19120538,19121209-19121310,19121430-191214...    29   3.8  
06_01_0664 + 4850445-4850879,4853155-4854186                           29   3.8  
12_02_0749 - 22758317-22760407                                         29   5.1  

>12_02_0617 +
           21256745-21256943,21257454-21257647,21257836-21258042,
           21258115-21258232,21258325-21258401,21258513-21258692,
           21259312-21259356,21260309-21260413,21261115-21261261
          Length = 423

 Score =  104 bits (249), Expect = 8e-23
 Identities = 50/111 (45%), Positives = 72/111 (64%)
 Frame = +2

Query: 317 IVEYFYRRFTHRGKPTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSDCYYINKDTLLR 496
           I +YF + F+      F+ +D+L P+VS KQNFDD+L+P DH SR  +D YY++  T+LR
Sbjct: 105 IYDYFDKNFSGN----FNKFDDLCPLVSIKQNFDDVLVPADHVSRSYNDTYYVDAQTVLR 160

Query: 497 AHMTHIKPNY*DLGLDNFLMIGDVYRRDEIDSTHFPVFHQVDAVRLQRKEE 649
            H +  +      G  +FL+ GDVYRRD IDSTH+P FHQ++  R+   +E
Sbjct: 161 CHTSAHQAELLRDGHTHFLVTGDVYRRDSIDSTHYPCFHQMEGFRVFTPDE 211


>10_08_0603 -
           19120434-19120538,19121209-19121310,19121430-19121462,
           19122049-19122216,19122311-19122373,19122514-19122624,
           19122926-19123035,19123150-19123446,19123632-19123710,
           19123811-19123919,19124000-19124041,19124743-19124873,
           19126150-19126797
          Length = 665

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = +2

Query: 263 GSQSTSSKRKSFINRATGIVEYFYRR-FTHRG-KPT---FSVYDNLSPVVSTKQNFDDLL 427
           G + T    K  + +   +V + + +   HR  KP    FS  D+ SP+        D +
Sbjct: 275 GGRYTEEDAKVIVEQILNVVSFCHLQGVVHRDLKPENFLFSTRDDHSPMKIIDFGLSDFI 334

Query: 428 IPNDHPSRLKSDCYYINKDTLLRAHMT 508
            P++  + +    YY+  + L R++ T
Sbjct: 335 RPDERLNDIVGSAYYVAPEVLHRSYST 361


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 255 SYLGRNLHLQKGNPLSIVRQESWNIFIAGLLTEVNRH 365
           S+L +  H+   N    VR  +W +   GL T++N+H
Sbjct: 199 SFLSKKKHIWSANVPQKVRIFAWRLASEGLATQLNKH 235


>12_02_0749 - 22758317-22760407
          Length = 696

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 503 YVLAIKYLCLC-NSNLTSIYLGDHLVLEGHQSSVLY*LRAISC 378
           Y++ IK L  C N +  + YLG H+VL+G  SSV+     I C
Sbjct: 401 YIMVIKSLLNCKNFSKANHYLG-HMVLKGLLSSVMSYNMVIDC 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,400,190
Number of Sequences: 37544
Number of extensions: 370622
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)