Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0298
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)              127   1e-29
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)               30   1.7  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             30   2.2  
SB_1102| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)                 29   5.2  
SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_20967| Best HMM Match : FDX-ACB (HMM E-Value=2.2e-07)
          Length = 318

 Score =  127 bits (306), Expect = 1e-29
 Identities = 63/114 (55%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
 Frame = +2

Query: 317 IVEYFYRRFTHRGK-PTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSDCYYINKDTLL 493
           I E+ Y  +   G  P F+  DNLSPVV+  QNFD LL+P DH SR ++D YYINK+ LL
Sbjct: 99  IHEFVYDSYRKWGNGPMFTTIDNLSPVVTVAQNFDSLLVPKDHISRSRNDNYYINKEFLL 158

Query: 494 RAHMTHIKPNY*DLGLDNFLMIGDVYRRDEIDSTHFPVFHQVDAVRLQRKEELF 655
           RAH +  + +    GLD FL+ GDVYRRDEIDS H+PVFHQ++ VRL  + ELF
Sbjct: 159 RAHTSAHQLDLIRSGLDAFLVTGDVYRRDEIDSCHYPVFHQMEGVRLFTQHELF 212


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +2

Query: 323 EYFYRRFTHRGKPTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSDCYYINKDTLLRAH 502
           E+    F   G P  S   +L P++  +  F  + +   +    K++     K  LLR H
Sbjct: 175 EFKAYNFDALGTPVTS--GHLHPLMKVRAQFRQIFLEMGYQYEWKTE---EAKKNLLRTH 229

Query: 503 MTHIKPNY*-DLGLDN------FLMIGDVYRRDEIDSTHFPVFHQVDAVRLQR 640
            T +       LG         F  I  V+R + +D+TH   FHQ++ +   R
Sbjct: 230 TTAVSARMLYKLGQQEKFTPAKFFSIDRVFRNETLDATHLAEFHQIEGLVADR 282


>SB_20183| Best HMM Match : Astacin (HMM E-Value=2.2e-06)
          Length = 230

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 317 IVEYFYRRFTHRGKPTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRL 454
           + EY Y    H  K TF+     SPV+    N D  L   +HPS+L
Sbjct: 118 VSEYDYNSLLHYSKTTFA--SGSSPVMEATDNPDKPLGNKNHPSKL 161


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 578 DEIDSTHFPVFHQVDAVRLQRKEELFCDKTRSRNF*GPNFDSSNPNXISK 727
           ++ID+TH  ++   DAV + R+ ++  DK R      PN  +SNP    K
Sbjct: 71  NDIDATHHELYQ--DAVTIARQVDVQPDKPRVAQTHRPNAPASNPEDYYK 118


>SB_1102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 578 DEIDSTHFPVFHQVDAVRLQRKEELFCDKTRSRNF*GPNFDSSNPNXISK 727
           ++ID+TH  ++   DAV + R+ ++  DK R      PN  +SNP    K
Sbjct: 243 NDIDATHHELYQ--DAVTIARQVDVQPDKPRVAQTHRPNAPASNPEDYYK 290


>SB_2434| Best HMM Match : Vicilin_N (HMM E-Value=0.01)
          Length = 317

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 283 KKEILYQSCDRNRGIFLSQVYSQR*TDIQCIRQLIARSQYKTEL 414
           KK +  Q  +R     L + + Q  TD+Q      AR Q++TE+
Sbjct: 17  KKRLRIQEGEREESSHLQETWDQSVTDLQIRSMTEAREQHETEI 60


>SB_25386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +2

Query: 284 KRKSFINRATGIVEYFYRRFTHRGKPTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSD 463
           K++ F ++A   VE       ++G+    + D + PV++ +Q + + L P +    + SD
Sbjct: 546 KQEKFGSKAADKVESMTHG--NKGEAGCMMTDKIEPVINHEQEYTEGLTPKEDSKPIYSD 603

Query: 464 CYYINKDTLLRAH 502
                  T +R H
Sbjct: 604 KRTPGSSTFMRKH 616


>SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 542 LSPDLNSSV*CESYVLAIKYLCLCNSNLTSIYLGD 438
           + P +N  + CE+      Y+C C +N T I+  D
Sbjct: 105 MRPCMNGGI-CEAIATCPGYICRCGTNFTGIHCED 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,877
Number of Sequences: 59808
Number of extensions: 472631
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)