Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0298
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...   106   2e-23
At3g57940.1 68416.m06458 expressed protein contains Pfam profile...    31   0.79 
At3g16180.1 68416.m02043 proton-dependent oligopeptide transport...    31   1.0  
At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768...    30   1.4  
At1g10490.1 68414.m01181 expressed protein contains Pfam profile...    29   4.2  
At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative ...    28   5.6  
At5g35080.1 68418.m04151 expressed protein                             28   7.4  
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g...    27   9.8  

>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/102 (47%), Positives = 70/102 (68%)
 Frame = +2

Query: 317 IVEYFYRRFTHRGKPTFSVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSDCYYINKDTLLR 496
           I +YF   ++++    F  +++LSP+V+TKQNFDD+L+P DH SR  +D YY++  T+LR
Sbjct: 104 IYDYFDSNYSNK----FEKFEDLSPIVTTKQNFDDVLVPADHVSRSLNDTYYVDSQTVLR 159

Query: 497 AHMTHIKPNY*DLGLDNFLMIGDVYRRDEIDSTHFPVFHQVD 622
            H +  +      G   FL+ GDVYRRD IDSTH+PVFHQ++
Sbjct: 160 CHTSAHQAELLRKGHSRFLVTGDVYRRDSIDSTHYPVFHQME 201


>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1024

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 431 PNDHPSRLKSDCYYINKDTLLRAH 502
           P  HPS  + D YY+N+DTL   H
Sbjct: 501 PACHPSPSQCDLYYVNRDTLFSYH 524


>At3g16180.1 68416.m02043 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 591

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = +2

Query: 368 SVYDNLSPVVSTKQNFDDLLIPNDHPSRLKSDCYYINKDTLLRA 499
           S++  L+ VV+      +L +P+ H SR   DCYY  KD+ L+A
Sbjct: 247 SLFTGLAQVVAAAYVKRNLTLPDHHDSR---DCYYRLKDSELKA 287


>At2g41530.1 68415.m05132 esterase, putative similar to SP|P10768
           Esterase D (EC 3.1.1.1) {Homo sapiens}; contains Pfam
           profile: PF00756 putative esterase
          Length = 284

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 368 SVYDNLSPVVSTKQNFDDLLIPNDH-PSRLKSDCYYINKDTLLRAH 502
           S Y+NLS  +   Q  +D   P+   PS+ +  C  +N   LLR H
Sbjct: 212 SKYNNLSATILIDQGENDQFYPDQLLPSKFEEACKKVNAPLLLRLH 257


>At1g10490.1 68414.m01181 expressed protein contains Pfam profile
           PF05127: Putative ATPase (DUF699)
          Length = 1028

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 431 PNDHPSRLKSDCYYINKDTLLRAH 502
           P  HP   + D YY+N+DTL   H
Sbjct: 486 PACHPLPSQCDLYYVNRDTLFSYH 509


>At4g39280.1 68417.m05563 phenylalanyl-tRNA synthetase, putative /
           phenylalanine--tRNA ligase, putative similar to
           SP|Q9Y285 Phenylalanyl-tRNA synthetase alpha chain (EC
           6.1.1.20) (Phenylalanine- -tRNA ligase alpha chain)
           (PheRS) {Homo sapiens}; contains Pfam profile PF01409:
           tRNA synthetases class II core domain (F)
          Length = 485

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 548 FLMIGDVYRRDEIDSTHFPVFHQVDAVRLQR 640
           +  I  V+R + +D TH   FHQ++ +   R
Sbjct: 338 YFSIDRVFRNEAVDRTHLAEFHQIEGLICDR 368


>At5g35080.1 68418.m04151 expressed protein
          Length = 282

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 652 QLLFAL*SHCIYLMENW---KMCRVNFISPVHIADHQKII 542
           +LL  L   C++  E W   + C   ++  +H+ D  KI+
Sbjct: 113 ELLQPLSEKCLFRQEGWWSYEFCHQKYVRQLHVEDENKIV 152


>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1240

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 275 TSSKRKSFINRATGIVEYFYRRFTHRGKPTFSVYDNL 385
           ++ K    + R  G VE+ + +FT+  +P  +++D+L
Sbjct: 344 SNKKEGQILERMKGEVEFNHVKFTYLSRPETTIFDDL 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,766,435
Number of Sequences: 28952
Number of extensions: 331176
Number of successful extensions: 712
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)