Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0297
         (313 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   0.18 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   0.56 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   2.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   9.2  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      19   9.2  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.18
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 154 VHGPENDACKPQDAKQSEQLVPVAPAG 234
           +  PE+D  K QD  + +  +P AP G
Sbjct: 233 ISDPEDDDDKDQDMDEGDLPLPAAPGG 259


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 0.56
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 255 CSQLYPDQPNPLQVTTRL 308
           C QL PD PN  ++  +L
Sbjct: 366 CGQLNPDNPNVYEILEKL 383


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 50  IVNNIAMSCPSG 85
           +VN+ + SCPSG
Sbjct: 240 LVNSFSCSCPSG 251



 Score = 19.8 bits (39), Expect = 6.9
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -3

Query: 236 KPAGATGTSCSDCLAS*GLQASFSGPXTRAQTQRMTGHC 120
           KP G TG++C + +         +G   +  T   T HC
Sbjct: 50  KP-GFTGSNCQNRINLCDSSPCLNGATCQDHTTHYTCHC 87


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 130 VIRCVCA 150
           V+RCVCA
Sbjct: 917 VVRCVCA 923


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 133 IRCVCARVHGPENDACKPQD 192
           + C+C    G E  A  PQ+
Sbjct: 123 LECMCRPCTGVEESAVIPQE 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,002
Number of Sequences: 336
Number of extensions: 1285
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)