Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0297
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   1.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   2.0  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   2.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    23   8.1  

>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -1

Query: 289 RGLGWSGYSWEQHHIMLXSQPELLVLVVQIVWHLEVC-KRH--FPVHXLVRRRNE*QGTV 119
           +GL W    W  HH  + +    L   VQ++  + V   RH  FPV  +V        TV
Sbjct: 562 KGLNWLYLRWYTHHPCILADEMGLGKTVQVISFISVLFYRHKCFPVLVIVP-----HATV 616

Query: 118 ARHPRRMRSPWA 83
           A   R ++  WA
Sbjct: 617 ANWERELKK-WA 627


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = -1

Query: 292 CRGLGWSG---YSWEQHHIMLXSQPEL 221
           C   GWS    Y W+ HHIM+    EL
Sbjct: 903 CNLSGWSQSSRYGWKGHHIMVQYWSEL 929


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 169 NDACKPQDAKQSEQLVPV 222
           ++  KP D+KQ E+L+PV
Sbjct: 165 SNTSKPMDSKQLERLIPV 182


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -2

Query: 201 LFGILRFASVIFRSMXSCADATNDRALLQGTPDE*GALGPLGQDIAMLFTIYFVSA*FIE 22
           L G  RFA  + R M    + T     +QG P   G L PL        T  F++A  + 
Sbjct: 671 LQGDARFACDVLRPMGCTVEQTATSTTVQGPPK--GTLKPLESIDMETMTDAFLTASVVA 728

Query: 21  SI 16
           ++
Sbjct: 729 AV 730


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,976
Number of Sequences: 5004
Number of extensions: 18626
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)