Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0297
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0464 + 3597568-3600244,3600345-3600742 28 1.8
11_03_0128 - 10437407-10438049,10438097-10438272 27 4.1
09_06_0084 - 20755365-20755931 26 5.4
04_03_0044 - 10103049-10103900 26 5.4
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280... 26 5.4
11_06_0675 + 26139284-26139745,26139932-26139980,26140118-261402... 26 7.2
10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706 25 9.5
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 25 9.5
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251... 25 9.5
02_05_0048 + 25418380-25418954,25419821-25419943,25420334-254203... 25 9.5
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 115 LQQCPVIRCVCARVHGPENDACKPQDAKQSEQLVP 219
L C VI+ VC +HG E D D K + L P
Sbjct: 13 LMACSVIQIVCQSLHGNETDRLSLLDFKNAIILDP 47
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 71 SCPSGPRAPHSSGVPCNSALSFVASAHEXMDRKMTLANLKMP 196
S GPR +SGV C++AL + H D + N MP
Sbjct: 10 SASGGPRVAFTSGVWCDAALPLI--KHAYRDAVLGRYNRTMP 49
>09_06_0084 - 20755365-20755931
Length = 188
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 124 CPVIRC-VCARVHGPENDA 177
CPV R V ARV GP++DA
Sbjct: 134 CPVCRAPVVARVEGPDDDA 152
>04_03_0044 - 10103049-10103900
Length = 283
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = -3
Query: 275 VWVQLGTASHNAXKPAGATGTSCSDCLAS*GLQASFSGPXTRAQTQRMTGHCCKAPPTNE 96
V +++ +S+ KP C + A+ ++ P T+ Q G PP N+
Sbjct: 159 VGLEVNASSYKVRKPVQRKRGKCGEKKAT--EKSEGKAPPTQG-AQGGKGKKEAKPPRND 215
Query: 95 EPLGHSDRT*LCY 57
+P G D+T CY
Sbjct: 216 KPYGQQDQT--CY 226
>01_06_0886 +
32725504-32725824,32725905-32726658,32727911-32728033,
32729477-32729535,32731427-32731732,32732006-32732236,
32732332-32732484,32732567-32732836
Length = 738
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 49 NCE*HSYVLSEWPKGSSFVG 108
NC H VL EWP + ++G
Sbjct: 73 NCAIHPAVLPEWPHDARYIG 92
>11_06_0675 +
26139284-26139745,26139932-26139980,26140118-26140215,
26140378-26140588,26140707-26140947,26141051-26141216,
26141308-26141451
Length = 456
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 163 PENDACKPQDAKQSEQLVPVA 225
PE D KPQDA S PVA
Sbjct: 146 PETDVVKPQDATASNAGKPVA 166
>10_08_0826 - 20840445-20840504,20840692-20840778,20841344-20841706
Length = 169
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = +2
Query: 71 SCPSGPRAPHSSGVPCNSAL 130
+CP PR P + PC L
Sbjct: 60 TCPPAPRKPRAPAAPCRKRL 79
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = -1
Query: 115 RHPRRMRSPWA-TRTGHS 65
RHPRR R PW+ R HS
Sbjct: 295 RHPRRHRRPWSLQRRRHS 312
>03_05_1060 -
30023407-30023553,30024274-30024390,30024958-30025129,
30026116-30026198,30026299-30026917,30027157-30027280,
30027637-30027745,30028214-30028399,30028716-30028763,
30028808-30028979,30029034-30029209
Length = 650
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 181 KPQDAKQSEQLVPVAPAGLXALCDAVPSCTQTSLTLCRS 297
K + S L P AP+ L VPS +T + +C S
Sbjct: 427 KAHEGAPSMALPPPAPSAAAMLSPPVPSKERTRICICAS 465
>02_05_0048 +
25418380-25418954,25419821-25419943,25420334-25420370,
25420458-25420555,25420654-25420788,25421021-25421210,
25421329-25422438
Length = 755
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 284 VRLVWVQLGTASHNAXKPAGATGTSCSD 201
+ VW +L A +A PA A+G C D
Sbjct: 690 ILFVWEKLNKAKADAFGPAVASGLICGD 717
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,508,321
Number of Sequences: 37544
Number of extensions: 152195
Number of successful extensions: 417
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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