Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0297
(313 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22063| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.047
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26) 30 0.33
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 28 1.8
SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07) 27 3.1
SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0) 27 3.1
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 27 3.1
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0) 27 3.1
SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7) 27 4.1
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 26 5.4
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6) 26 5.4
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 26 7.2
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 26 7.2
SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13) 26 7.2
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.2
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05) 25 9.5
>SB_22063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 33.1 bits (72), Expect = 0.047
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +3
Query: 261 QLYPDQPNPLQVTTRLK 311
+LYPDQPNPLQVT +K
Sbjct: 33 KLYPDQPNPLQVTALVK 49
>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
Length = 1536
Score = 30.3 bits (65), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 148 ARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSCTQ 273
A H PENDAC+P S+ VP + + D++ +C++
Sbjct: 946 AATHSPENDACQPDKITCSKDNVPCSKDDITCNKDSI-ACSR 986
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 64 SYVLSEWPKGSSFVGGALQQCPVIRCVCARVHGPENDAC 180
SY + E P+ F+ L+QC C+ GP + C
Sbjct: 846 SYCVRECPQKGHFLNAKLRQCKKCHSSCSSCIGPSANDC 884
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 115 LQQCPVIRCVCARVHG-PENDACKP 186
L PV+ C CA +HG PE+ KP
Sbjct: 903 LYSYPVVVCCCADIHGNPEDGPLKP 927
>SB_16636| Best HMM Match : EGF (HMM E-Value=7.6e-07)
Length = 302
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +1
Query: 145 CARVHGPENDACKPQDAKQSEQLVPVAPAGLXALC 249
C + P D CKP K V V G LC
Sbjct: 223 CLLHNKPSADPCKPNPCKHDGYCVQVGQTGFRCLC 257
>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 124 CPVIRCVCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSCTQTSLTLC 291
C +C G +CKP + + V APA L + CD + C + +++ C
Sbjct: 162 CSGENSICENTDGSFKCSCKPGYTPKFSKAVGDAPANLTS-CDDIDEC-KLNISTC 215
>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 299
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 124 CPVIRCVCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSCTQTSLTLC 291
C +C G +CKP + + V APA L + CD + C + +++ C
Sbjct: 113 CSGENSICENTDGSFKCSCKPGYTPKFSKAVGDAPANLTS-CDDIDEC-KLNISTC 166
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -3
Query: 155 TRAQTQRMTGHCCKAPPTNEEPLGHSDRT 69
T+ QT GH P P+GH+ T
Sbjct: 125 TQPQTSSTVGHTTSTKPQTSSPIGHTTST 153
>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1054
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 124 CPVIRCVCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSCTQTSLTLC 291
C +C G +CKP + + V APA L + CD + C + +++ C
Sbjct: 380 CSGENSICENTDGSFKCSCKPGYTPKFSKAVGDAPANLTS-CDDIDEC-KLNISTC 433
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 124 CPVIRCVCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSC 267
C +C G N +CK + + V APA L + CD + C
Sbjct: 59 CSGNNSICENTDGSFNCSCKSGYTPKFSEAVGDAPANLTS-CDDIDEC 105
>SB_30605| Best HMM Match : DUF601 (HMM E-Value=1.7)
Length = 329
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 80 SGPRAPHSSGV--PCNSALSFVASAHEXMD 163
SGPR P SSG+ P + L F+ +H ++
Sbjct: 181 SGPRVPESSGIGTPSPAPLYFLYDSHRALE 210
>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
Length = 782
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 165 RSMXSCADATNDRALLQGTPDE*GALGPLGQDIAML 58
RSM SCA D L TP E GA + + M+
Sbjct: 708 RSMRSCAKLAKDDRYLTRTPAEQGACSVVRSSLNMI 743
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Frame = +1
Query: 121 QCPVIRCVCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALCDAVPSCT---QTSLTLC 291
+C ++ VC G + C+P P++ G +C C T C
Sbjct: 883 ECDPLKAVCTNTEGSYSCTCRPGYGGDGRTCTPISSCG-GEVCHQFGECVTDDDTGRKRC 941
Query: 292 RSRPG 306
+ R G
Sbjct: 942 QCRVG 946
>SB_12493| Best HMM Match : RrnaAD (HMM E-Value=4.6)
Length = 984
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 165 RSMXSCADATNDRALLQGTPDE*GALGPLGQDIAML 58
RSM SCA D L TP E GA + + M+
Sbjct: 319 RSMRSCAKLAKDDRYLTRTPAEQGACSVVRSSLNMI 354
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 271 GYSWEQHHIMLXSQPELLVLVV 206
G+SW + H+M + E +VL++
Sbjct: 686 GHSWRKQHVMFRTYNEAVVLIL 707
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 53 VNNIAMSCPSGPRAPH--SSGVPCN 121
VN+ CPSG PH S +PC+
Sbjct: 1679 VNSTGAICPSGTYCPHGASQPIPCD 1703
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 163 PENDACKPQDAKQSEQLVPVAPAGLXAL 246
P+ +PQD + +Q P P GL A+
Sbjct: 750 PKASVMEPQDQTRGQQATPQVPMGLPAV 777
>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
Length = 310
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 136 RCVCARVHGPENDA 177
RCVC R GP +DA
Sbjct: 266 RCVCVRTTGPSSDA 279
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 64 SYVLSEWPKGSSFVGGALQQC 126
SY++++WP S F G A + C
Sbjct: 320 SYLMNKWPVKSPFTGEAQELC 340
>SB_15410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1147
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 139 CVCARVHGPENDACKPQDAKQSEQLVPVAP 228
C + + END C+ K S+ +PV P
Sbjct: 1065 CTIGKSYKDENDVCERCPTKDSDITLPVTP 1094
>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 227 GATGTSCSDCLAS*GLQASFSGPXTRAQTQRMTGHCCKAPPTNEEPLGH 81
G CS L++ G+ + S T A C APP E P+G+
Sbjct: 371 GEWDAPCSGALSAAGVVVTRSVTATLASADVRRCFCRYAPPRPEWPMGY 419
>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
Length = 872
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 310 LSLVVTCRGLGWSGYSWEQHHIMLXSQPELL 218
LSL V C W GY H +L +LL
Sbjct: 657 LSLAVACVTSSWLGYDLNAHQNLLLLSGQLL 687
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,025
Number of Sequences: 59808
Number of extensions: 173029
Number of successful extensions: 504
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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