Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0297
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.0  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   8.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  NIAMSCPSGPRAPHSSGVPCNSAL 130
           ++A+ CP G RA  +    CN  L
Sbjct: 607 DLALICPDGGRAEINEWERCNLGL 630


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  NIAMSCPSGPRAPHSSGVPCNSAL 130
           ++A+ CP G RA  +    CN  L
Sbjct: 607 DLALICPDGGRAEINEWERCNLGL 630


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  PSGPRAPHSSGVPCNSAL 130
           PSGP +P S    C+S L
Sbjct: 65  PSGPNSPGSFTAGCHSNL 82


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  NIAMSCPSGPRAPHSSGVPCNSAL 130
           ++A+ CP G RA  +    CN  L
Sbjct: 607 DLALICPDGGRAEINEWERCNLGL 630


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  PSGPRAPHSSGVPCNSAL 130
           PSGP +P S    C+S L
Sbjct: 65  PSGPNSPGSFTAGCHSNL 82


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -1

Query: 262 WEQHHIMLXSQPELLVLVVQIVWHLEVCKRHFPV 161
           W    I   + PE+ +L   IV   E+C    P+
Sbjct: 477 WLGETIEAKTYPEVTMLFSDIVGFTEICSTATPM 510


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 226 PAGLXALCDAVPSCTQTSLTLCRSR 300
           P G+   CD       T LTL R +
Sbjct: 367 PPGVCYTCDVCGKTLSTKLTLKRHK 391


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +1

Query: 142 VCARVHGPENDACKPQDAKQSEQLVPVAPAGLXALC 249
           V  R  GP   A       +SEQ +    A   ALC
Sbjct: 712 VMCRTSGPRGVAIVSASTARSEQFLCRYEAHCFALC 747


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 262 WEQHHIMLXSQPE 224
           WE+ +I L  QPE
Sbjct: 232 WEEVYIPLYQQPE 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,213
Number of Sequences: 438
Number of extensions: 1420
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)