Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0297
(313 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identi... 28 1.5
At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identi... 28 1.5
At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identi... 28 1.5
At1g20400.1 68414.m02544 myosin heavy chain-related 28 1.5
At5g38030.1 68418.m04581 MATE efflux family protein similar to r... 27 3.5
At3g26590.1 68416.m03319 MATE efflux family protein similar to r... 27 3.5
At5g20270.1 68418.m02413 expressed protein contains Pfam domain,... 26 4.6
At5g50150.1 68418.m06211 expressed protein strong similarity to ... 26 6.1
At3g15390.1 68416.m01951 expressed protein low similarity to PRL... 26 6.1
At2g33735.1 68415.m04135 DNAJ heat shock N-terminal domain-conta... 26 6.1
At1g69630.1 68414.m08010 F-box family protein contains F-box dom... 26 6.1
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro... 25 8.1
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport... 25 8.1
At1g12950.1 68414.m01504 MATE efflux family protein similar to r... 25 8.1
>At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 226
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 263 LGTASHNAXKPAGATGT-SCSDC 198
+GT+S+N+ +GA+GT +C DC
Sbjct: 93 VGTSSNNSGSGSGASGTATCQDC 115
>At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 263 LGTASHNAXKPAGATGT-SCSDC 198
+GT+S+N+ +GA+GT +C DC
Sbjct: 93 VGTSSNNSGSGSGASGTATCQDC 115
>At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 263 LGTASHNAXKPAGATGT-SCSDC 198
+GT+S+N+ +GA+GT +C DC
Sbjct: 93 VGTSSNNSGSGSGASGTATCQDC 115
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 139 NE*QGTVARHPRRMRSPWATRTGHSYVIHNLLCXC 35
N +G VAR P PW T G+ V L C
Sbjct: 307 NAPRGLVARVPETHERPWTTPEGYMCVYEKFLTEC 341
>At5g38030.1 68418.m04581 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; putative
multidrug efflux protein NorM - Vibrio parahaemolyticus,
EMBL:AB010463
Length = 498
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 295 TCRGLGWSGYSWEQHH 248
TC G WSG+SWE H
Sbjct: 250 TC-GEAWSGFSWEAFH 264
>At3g26590.1 68416.m03319 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 500
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 295 TCRGLGWSGYSWEQHH 248
TC G WSG+SWE H
Sbjct: 250 TC-GEAWSGFSWEAFH 264
>At5g20270.1 68418.m02413 expressed protein contains Pfam domain,
PF03006: Uncharacterised protein family (Hly-III /
UPF0073)
Length = 332
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 121 VARHPRRMRSPWATRTGHSYVIHNL 47
V R P R++ W R GHS+ I ++
Sbjct: 283 VGRVPERLKPGWFDRVGHSHQIFHV 307
>At5g50150.1 68418.m06211 expressed protein strong similarity to
unknown protein (gb|AAF04872.1) contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 420
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 311 FEPGRDLQRVRLVWVQLGTASHNAXKPAGATGTSCSDCLAS*GLQASFSGPXTRAQ 144
F P R++Q++R V L + + K + +C+ S LQ +F P + Q
Sbjct: 45 FRPNREIQKLRRVEAYLSKINKPSIKTIHSPDGDVIECVPS-HLQPAFDHPQLQGQ 99
>At3g15390.1 68416.m01951 expressed protein low similarity to
PRLI-interacting factor N [Arabidopsis thaliana]
GI:11139276
Length = 468
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 199 QSEQLVPVAPAGLXALCDAVPSCTQTSLTLCRSRP 303
Q+ Q V VA L A+ + P C Q + S+P
Sbjct: 39 QASQNVDVAGEILSAMAEKTPQCDQVEMKTATSKP 73
>At2g33735.1 68415.m04135 DNAJ heat shock N-terminal
domain-containing protein similar to SP|P30725 Chaperone
protein dnaJ Clostridium acetobutylicum; contains Pfam
profile PF00226 DnaJ domain
Length = 119
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 313 YLSLVVTCRGLGWSGYSW 260
Y L++TC GLG Y W
Sbjct: 102 YKELILTCNGLGVKHYLW 119
>At1g69630.1 68414.m08010 F-box family protein contains F-box domain
Pfam:PF00646
Length = 451
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 313 YLSLVVTCRGLGWSGYSWEQHHIMLXSQPELLVLVVQ 203
+ +L V C + + GY WE I L S P L LVV+
Sbjct: 328 FRNLSVLC--VEFYGYMWEMLPIFLESCPNLKTLVVK 362
>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 309
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 139 CVCARVHGPENDACKPQDAKQSEQLVP 219
C VHG E++ +DAK+ +++P
Sbjct: 246 CRVLTVHGSEDEVIPVEDAKEFAKIIP 272
>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 1095
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 175 ACKPQDAKQSEQLVPVAPAGLXALCDAVP 261
ACK +D + + LV + P L L A+P
Sbjct: 842 ACKSRDVEDATALVRLIPVWLTTLAYAIP 870
>At1g12950.1 68414.m01504 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
MatE
Length = 522
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 295 TCRGLGWSGYSWEQHH 248
TC G WSG++WE H
Sbjct: 272 TC-GEAWSGFTWEAFH 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,451,082
Number of Sequences: 28952
Number of extensions: 107976
Number of successful extensions: 288
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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