Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0295
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 89 5e-19
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 72 8e-14
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 72 1e-13
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 68 1e-12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 61 2e-10
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 61 2e-10
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 60 3e-10
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 60 3e-10
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 58 1e-09
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 58 2e-09
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 55 1e-08
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 54 2e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 50 3e-07
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 50 5e-07
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 48 1e-06
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 46 5e-06
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 39 7e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 31 0.15
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 30 0.34
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 27 3.1
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 5.5
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 26 7.2
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 9.6
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 89.4 bits (212), Expect = 5e-19
Identities = 43/81 (53%), Positives = 58/81 (71%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD+LD ALRRAGR ++EI L +P+ AR++I+ + K + LS D D LA+ TPG+VGA
Sbjct: 324 PDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAKQTPGYVGA 383
Query: 442 DLQALVNKASTYAVKRIFSEI 504
DL+AL A A+KRIF+EI
Sbjct: 384 DLKALTAAAGIIAIKRIFNEI 404
Score = 58.8 bits (136), Expect = 8e-10
Identities = 31/84 (36%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILA--QVTPGFV 435
PD +DPA+ R GRL++ + + +P R EI+ L K L E+V++++L + F
Sbjct: 638 PDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFS 697
Query: 436 GADLQALVNKASTYAVK-RIFSEI 504
GADL ALV +A+ A++ +F++I
Sbjct: 698 GADLAALVREAAVTALRSAVFADI 721
Score = 54.8 bits (126), Expect = 1e-08
Identities = 24/43 (55%), Positives = 35/43 (81%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
++RE+FE A++ AP ++FIDEIDAV R AQ++ME+R+VAQ
Sbjct: 255 KVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQ 297
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMV 187
+R++F RA+A++P V+F DE+DA+ R + + R+V
Sbjct: 574 VRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVV 613
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 72.1 bits (169), Expect = 8e-14
Identities = 32/75 (42%), Positives = 53/75 (70%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+++DPALRR GR ++E+ +GIP R EI+ I KN+ L++DVD+ +A T G+VG+
Sbjct: 370 PNSIDPALRRFGRFDREVDVGIPDPTGRLEILRIHTKNMKLADDVDLEQIAAETHGYVGS 429
Query: 442 DLQALVNKASTYAVK 486
DL +L ++A+ ++
Sbjct: 430 DLASLCSEAAMQQIR 444
Score = 66.9 bits (156), Expect = 3e-12
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +DPAL R GRL+Q I + +P +AR I+ ++ ++EDVD+ +A+ T GF GA
Sbjct: 645 PDQIDPALMRPGRLDQLIYVPLPDEEARFSILQTQLRHTPVAEDVDLRAVAKATHGFSGA 704
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ +V +A A+K E
Sbjct: 705 DLEFVVQRAVKLAIKDSIEE 724
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/42 (38%), Positives = 30/42 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R+ FE A+ +P+++FIDEID++ R ++E+R+V+Q
Sbjct: 306 LRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQ 347
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/28 (46%), Positives = 24/28 (85%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R++F++A+AAAP V+F+DE+D++ R
Sbjct: 579 VRDIFDKARAAAPCVVFLDELDSIAKAR 606
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/81 (39%), Positives = 55/81 (67%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P++LDPAL R GR ++ I + +P ++ R I+ +++ L +DVD++I+A+ T GF GA
Sbjct: 416 PESLDPALTRPGRFDRHIHVPLPDVRGRLAILLQHTRHVPLGKDVDLSIIARGTSGFAGA 475
Query: 442 DLQALVNKASTYAVKRIFSEI 504
DL L+N+A+ YA K + + +
Sbjct: 476 DLANLINQAAVYASKNLSTAV 496
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+RELF A+ APS++FIDE+DA+
Sbjct: 347 RVRELFAAARKQAPSIIFIDELDAI 371
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 68.1 bits (159), Expect = 1e-12
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLS-EDVDMNILAQVTPGFVG 438
P+++D ALRR GRLE+EI +GIP AR +II +L + D + LA T +VG
Sbjct: 425 PNSIDEALRRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVG 484
Query: 439 ADLQALVNKASTYAVKRIFS 498
ADL A+V +A+ A+KR S
Sbjct: 485 ADLAAVVREAALRAIKRTIS 504
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +DPAL R GRL++ + +G P +ARK+I+ I + + +EDVD++++A+ T G GA
Sbjct: 692 PDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGA 751
Query: 442 DLQALVNKASTYAV 483
++ AL +A A+
Sbjct: 752 EVVALCQEAGLIAM 765
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
R+R++FE A+A PS++FIDEIDA+ R + E R VA
Sbjct: 360 RLRKIFEDARAHQPSIIFIDEIDALAPKRTEDVSEAESRAVA 401
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/41 (43%), Positives = 30/41 (73%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
+R++F++A+ A+PSV+F DEIDA+ NR + + R+VA
Sbjct: 630 VRQVFQKARQASPSVIFFDEIDALTANR--GEDNSSDRVVA 668
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM--NILAQVTPGFV 435
PD LDPAL R GR +++IT+ P + R++I + K+I ++++D+ LA +T GF
Sbjct: 445 PDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFT 504
Query: 436 GADLQALVNKASTYAVKRIFSEI 504
GAD+ + N+ + A + +E+
Sbjct: 505 GADIMNVCNEGALIAARSNSNEV 527
Score = 35.5 bits (78), Expect = 0.009
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R+LF A+ AP ++FIDEIDA+
Sbjct: 376 RVRDLFATARKNAPCIIFIDEIDAI 400
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 60.9 bits (141), Expect = 2e-10
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLS-EDVDMNILAQVTPGFVG 438
PDA+DPALRR GR ++E +P ARK+II I +N + ++LA+ + G+ G
Sbjct: 417 PDAVDPALRRPGRFDREFYFPLPDRDARKKIIEIHTRNWDPPVPEWLCSMLAEKSKGYGG 476
Query: 439 ADLQALVNKASTYAVKRIFSEIH 507
ADL+AL +A+ ++KR + +++
Sbjct: 477 ADLRALCTEAALNSIKRTYPQLY 499
Score = 34.7 bits (76), Expect = 0.016
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
++R LFE A++ PS++F DEID + R Q+ + +V+
Sbjct: 352 QLRLLFEEAKSTQPSIIFFDEIDGLAPVRSSKQEQIHASIVS 393
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 60.5 bits (140), Expect = 3e-10
Identities = 23/75 (30%), Positives = 49/75 (65%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+ LD AL R GR+++++ G+P L+ R I+ I K++ + +D+ ++A++ P GA
Sbjct: 328 PNTLDEALMRPGRIDRKVEFGLPDLEGRAHILRIHAKSMAIDKDIRWELIARLCPSQTGA 387
Query: 442 DLQALVNKASTYAVK 486
+L+++ +A +A++
Sbjct: 388 ELRSVCTEAGMFAIR 402
Score = 33.5 bits (73), Expect = 0.036
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RELFE A+ ++F DEIDA+ G R
Sbjct: 261 VRELFEMARTKKACIIFFDEIDAIGGAR 288
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 60.5 bits (140), Expect = 3e-10
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL+++I + +P R EI+ I + ++ ++D L ++T G GA
Sbjct: 281 PDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGA 340
Query: 442 DLQALVNKASTYAVK 486
DL+ +V +A A+K
Sbjct: 341 DLRNVVTEAGFIAIK 355
Score = 33.9 bits (74), Expect = 0.027
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IRE+F A+ P V+F+DEIDA+ G R
Sbjct: 214 IREMFGYAKEHEPCVIFMDEIDAIGGRR 241
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 58.4 bits (135), Expect = 1e-09
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEI--INILCKNITLSEDVDMNILAQVTPGFV 435
P+ LDPALRR GR ++E +P +AR +I IN L + + E ++ LA+ T G+
Sbjct: 523 PNDLDPALRRPGRFDREFYFPLPNKQARMKILEINSLHFSPKIPESYLLH-LAESTSGYG 581
Query: 436 GADLQALVNKASTYAVKRIFSEIH 507
GADL+AL +A+ AV+R F +I+
Sbjct: 582 GADLKALCTEAALNAVRRTFPQIY 605
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
++R LFE A+ PS++F DEID + R Q+ +V+
Sbjct: 458 QLRLLFEEARRVQPSIIFFDEIDGLAPIRSSKQEQTHSSIVS 499
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 57.6 bits (133), Expect = 2e-09
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGI-PTLKARKEIINILCKNITLSEDVDMNILAQ-VTPGFV 435
PD LDP+L R GR ++ + LGI + +++ ++ L K L E +D+N +A+ P F
Sbjct: 804 PDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIAKNCHPNFT 863
Query: 436 GADLQALVNKASTYAVKRIFSEI 504
GAD+ AL + A A+KR +EI
Sbjct: 864 GADMYALCSDAVLSAIKRKTNEI 886
Score = 33.1 bits (72), Expect = 0.048
Identities = 11/28 (39%), Positives = 22/28 (78%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R +FE+A+ ++P V+F DE+D++ +R
Sbjct: 736 VRNVFEKARNSSPCVIFFDELDSIAPHR 763
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/74 (33%), Positives = 47/74 (63%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R GR++++I P+ +AR EI+ I +++ L+ +D+ +A+ G GA+
Sbjct: 296 DILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAE 355
Query: 445 LQALVNKASTYAVK 486
L+ + +A +A++
Sbjct: 356 LKGVCTEAGMFALR 369
Score = 35.1 bits (77), Expect = 0.012
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RELF A+ APS++F+DEID++ +R
Sbjct: 227 VRELFVMAREHAPSIIFMDEIDSIGSSR 254
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINI----LCKNITLSEDVDMNILAQVTPGF 432
D +D AL R GRLE + + +P R +I+ I + N L DVDM LA +T F
Sbjct: 428 DMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNF 487
Query: 433 VGADLQALVNKASTYAVKR 489
GA++ L+ AS++A R
Sbjct: 488 SGAEIAGLIKSASSFAFYR 506
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 71 RELFERAQAAAPSVLFIDEIDAVCGNR 151
RE +R + + ++ DE+DA+C R
Sbjct: 362 REYRDRGEESGLHIIIFDELDAICKKR 388
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 50.4 bits (115), Expect = 3e-07
Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R+GRL++++ +P +AR I+ I + + + +D++ LA+ T + GA
Sbjct: 335 DTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAM 394
Query: 445 LQALVNKASTYAVKRIFSEI-HE 510
L+++ +A A+++ ++I HE
Sbjct: 395 LKSVCVEAGMIALRQGDTKINHE 417
Score = 33.1 bits (72), Expect = 0.048
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQK 166
+R+ F A+ +P+++FIDE+DA+ R ++K
Sbjct: 267 VRDAFALAKEKSPAIIFIDELDAIGTKRFDSEK 299
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +DPAL R GRL++ I +P + R E++ L + + L+ +T G+ A
Sbjct: 752 PDMIDPALLRPGRLDKLIFCDLPNEEERLEVLQKLANRFHIENAAMLKKLSTLTDGYTYA 811
Query: 442 DLQALVNKASTYAVKRIFSEI 504
DL +L+ A AV ++ +
Sbjct: 812 DLSSLLYDAHLIAVHKLLKRV 832
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R+LF RAQ A P VLF DE D+V R + R+V Q
Sbjct: 688 VRDLFSRAQMAKPCVLFFDEFDSVAPRRGQDSTGVTDRVVNQ 729
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +1
Query: 271 LDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGADLQ 450
LDPAL R GR++++I P +++I I + L EDV++ L Q GA+++
Sbjct: 344 LDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIK 403
Query: 451 ALVNKASTYAVK 486
A+V++A A++
Sbjct: 404 AIVSEAGLLALR 415
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+R+LF A+ +PS++FIDEIDA+ R AQ E+ +
Sbjct: 273 VRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREI 311
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 46.4 bits (105), Expect = 5e-06
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+R+LFE A+ PS++FIDEID++CG+R + + +R+
Sbjct: 210 VRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESESSRRI 248
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITL-GIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
D LDPAL R GRL+++I + R+ + + + LS +VD++ GA
Sbjct: 284 DTLDPALLRPGRLDRKIEFPSYRDRRQRRLVFQTITAKMLLSPEVDLDTFIMRPDASSGA 343
Query: 442 DLQALVNKASTYAVKR 489
+ A++ A AV++
Sbjct: 344 QIAAIMQDAGLLAVRK 359
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+R++F A+ AP+++FIDEIDA+ R AQ ++ +
Sbjct: 216 VRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREV 254
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF A+ +PS++F+DEID++ R
Sbjct: 540 VRALFTLAKKLSPSIIFVDEIDSLLSAR 567
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 30.3 bits (65), Expect = 0.34
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LFE A+ SV+F+DEID++ R
Sbjct: 460 VRALFEVAKRQTCSVIFVDEIDSILSAR 487
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEI 354
P+ LDPAL R GR++ + LG T + +E+
Sbjct: 349 PEKLDPALVRPGRVDVKAYLGNATPEQVREM 379
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +1
Query: 298 RLEQEITLGIPTLKARKE-----IINILCKNITLSEDVDMNILAQVTPGFV 435
R QEI+ G TL K I +LC+ L ++ +NI ++ PG V
Sbjct: 706 RKSQEIS-GCGTLHVNKSDEIRSICPLLCERANLPKNTPLNIYEEIKPGMV 755
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 77 LFERAQAAAPSVLFIDEIDAVCGNR 151
LF A+ P+++FIDEID R
Sbjct: 176 LFTLARKLEPTIIFIDEIDTFLRQR 200
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 400 MNILAQVTPGFVGADLQALVNKASTYAVKRIFSE 501
+NILAQ+ GA L ++ KAS + I+++
Sbjct: 222 LNILAQILGSMAGAFLGGILAKASMHLTDPIWNQ 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,635
Number of Sequences: 5004
Number of extensions: 45215
Number of successful extensions: 142
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -