Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0295
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   1.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 304 EQEITLGIPTLKARKEIINILCKNITLS 387
           ++E+ LG  + K R+++IN  C+++  S
Sbjct: 426 DEELILGELSEKLREDVINYNCRSLVAS 453


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 304 EQEITLGIPTLKARKEIINILCKNITLS 387
           ++E+ LG  + K R+++IN  C+++  S
Sbjct: 394 DEELILGELSEKLREDVINYNCRSLVAS 421


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 81  LRELKLPHQVCCLLMKLMQFVVTEYMHKKTWKNVWL 188
           L+++K+PH +        + VVT  +    + N W+
Sbjct: 165 LKQVKIPHDIAINSTTGKRNVVTPIVQSFDYNNTWV 200


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 291 GRSPRARDYFRYPYIK 338
           G +P +RDYF  P+ K
Sbjct: 92  GSTPDSRDYFSRPFEK 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,001
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)