Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0295
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 79 3e-15
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 74 1e-13
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 74 1e-13
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 74 1e-13
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 72 5e-13
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 71 7e-13
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 71 1e-12
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 70 2e-12
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 69 5e-12
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 68 8e-12
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 67 1e-11
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 66 3e-11
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 64 1e-10
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 64 1e-10
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 63 2e-10
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 62 4e-10
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 62 6e-10
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 61 7e-10
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 60 1e-09
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 60 1e-09
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 60 2e-09
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 60 2e-09
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 60 2e-09
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 59 3e-09
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 59 3e-09
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 59 3e-09
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 59 3e-09
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 59 4e-09
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 58 7e-09
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 57 1e-08
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 56 3e-08
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 52 3e-07
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 51 8e-07
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 51 1e-06
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 50 2e-06
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 49 3e-06
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 48 6e-06
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 48 1e-05
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 47 1e-05
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 47 2e-05
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 47 2e-05
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 45 7e-05
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 44 9e-05
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 44 9e-05
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 44 1e-04
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 43 3e-04
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 42 5e-04
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 38 0.006
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 35 0.073
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 35 0.073
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 34 0.097
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 34 0.097
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 31 1.2
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 29 2.7
At2g38370.1 68415.m04714 expressed protein 29 2.7
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 29 2.7
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 29 3.6
At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containi... 29 4.8
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 29 4.8
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 28 6.3
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 28 8.4
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PDALDPALRR+GR E EI L P AR EI++++ + + L D +A++TPGFVGA
Sbjct: 389 PDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIARLTPGFVGA 448
Query: 442 DLQALVNKASTYAVKRI 492
DL+++ A A+KRI
Sbjct: 449 DLESVAYLAGRKAIKRI 465
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
IRELF +A APS++FIDEIDA+ R + Q++MEKR+V Q
Sbjct: 315 IRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQ 356
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVT-PGFVG 438
PD +DPA R GR + + +P R I+ + + + VD++ +A+ GF G
Sbjct: 673 PDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNNCEGFSG 732
Query: 439 ADLQALVNKASTYAVKRI 492
ADL LV KA+ AV+ +
Sbjct: 733 ADLAHLVQKATFQAVEEM 750
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IR LF+RA+ AP V+F DE+DA+ +R
Sbjct: 610 IRTLFQRARTCAPCVIFFDEVDALTTSR 637
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/75 (44%), Positives = 53/75 (70%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+++DPALRR GR ++EI +G+P R E++ I KN+ L+EDVD+ +++ T G+VGA
Sbjct: 353 PNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGA 412
Query: 442 DLQALVNKASTYAVK 486
DL AL +A+ ++
Sbjct: 413 DLAALCTEAALQCIR 427
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +D AL R GRL+Q I + +P +R I + +++DVD+ LA+ T GF GA
Sbjct: 629 PDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKDVDVTALAKYTQGFSGA 688
Query: 442 DLQALVNKASTYAVK 486
D+ + +A YA++
Sbjct: 689 DITEICQRACKYAIR 703
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R+ FE A+ APS++FIDEID++ R ++E+R+V+Q
Sbjct: 289 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 330
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKD 169
+RE+F++A+ +AP VLF DE+D++ R ++ D
Sbjct: 562 VREIFDKARQSAPCVLFFDELDSIATQRGNSAGD 595
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/75 (44%), Positives = 53/75 (70%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+++DPALRR GR ++EI +G+P R E++ I KN+ L+EDVD+ +++ T G+VGA
Sbjct: 353 PNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGA 412
Query: 442 DLQALVNKASTYAVK 486
DL AL +A+ ++
Sbjct: 413 DLAALCTEAALQCIR 427
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +D AL R GRL+Q I + +P +R I + +++DVD+ LA+ T GF GA
Sbjct: 630 PDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALAKYTQGFSGA 689
Query: 442 DLQALVNKASTYAVK 486
D+ + +A YA++
Sbjct: 690 DITEICQRACKYAIR 704
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R+ FE A+ APS++FIDEID++ R ++E+R+V+Q
Sbjct: 289 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQ 330
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RE+F++A+ +AP VLF DE+D++ R
Sbjct: 562 VREIFDKARQSAPCVLFFDELDSIATQR 589
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/75 (44%), Positives = 53/75 (70%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+++DPALRR GR ++EI +G+P R E++ I KN+ L+EDVD+ +++ T G+VGA
Sbjct: 354 PNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGA 413
Query: 442 DLQALVNKASTYAVK 486
DL AL +A+ ++
Sbjct: 414 DLAALCTEAALQCIR 428
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/75 (37%), Positives = 47/75 (62%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD +DPAL R GRL+Q I + +P ++R +I + +++DVD+ LA+ T GF GA
Sbjct: 630 PDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALAKYTQGFSGA 689
Query: 442 DLQALVNKASTYAVK 486
D+ + ++ YA++
Sbjct: 690 DITEICQRSCKYAIR 704
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/42 (42%), Positives = 30/42 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R+ FE A+ APS++FIDEID++ R ++E+R+V+Q
Sbjct: 290 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 331
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RE+F++A+ +AP VLF DE+D++ R
Sbjct: 563 VREIFDKARQSAPCVLFFDELDSIATQR 590
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/81 (41%), Positives = 52/81 (64%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LD AL R GR ++++T+ P + R +I+ + + L +DVD + +A+ TPGF GA
Sbjct: 410 PDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALGKDVDFDKVARRTPGFTGA 469
Query: 442 DLQALVNKASTYAVKRIFSEI 504
DLQ L+N+A+ A +R EI
Sbjct: 470 DLQNLMNEAAILAARRELKEI 490
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R+LFE+A++ AP ++FIDEIDAV
Sbjct: 342 RVRDLFEKAKSKAPCIVFIDEIDAV 366
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 71.3 bits (167), Expect = 7e-13
Identities = 30/76 (39%), Positives = 54/76 (71%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P+ LD AL R GR ++++++G+P ++ R+EI+ + ++ L +DV ++++A TPGF GA
Sbjct: 371 PEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGA 430
Query: 442 DLQALVNKASTYAVKR 489
DL L+N+A+ A +R
Sbjct: 431 DLANLMNEAAILAGRR 446
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R R+LF +A+A +P ++FIDEIDAV
Sbjct: 303 RARDLFNKAKANSPCIVFIDEIDAV 327
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/81 (40%), Positives = 51/81 (62%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LD AL R GR ++++T+ P + R +I+ + + + +DVD +A+ TPGF GA
Sbjct: 398 PDVLDSALLRPGRFDRQVTVDRPDVAGRVQILKVHSRGKAIGKDVDYEKVARRTPGFTGA 457
Query: 442 DLQALVNKASTYAVKRIFSEI 504
DLQ L+N+A+ A +R EI
Sbjct: 458 DLQNLMNEAAILAARRELKEI 478
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R+LFE+A++ AP ++FIDEIDAV
Sbjct: 330 RVRDLFEKAKSKAPCIVFIDEIDAV 354
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GR ++ I + P ++ R+EI+ + + +SEDVD+ +A+ TPGF GA
Sbjct: 506 PDILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGA 565
Query: 442 DLQALVNKASTYA 480
DL LVN A+ A
Sbjct: 566 DLANLVNIAAIKA 578
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
R+R LF+ A+ AP ++FIDEIDAV R
Sbjct: 442 RVRSLFQAAKKKAPCIIFIDEIDAVGSTR 470
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 68.5 bits (160), Expect = 5e-12
Identities = 32/74 (43%), Positives = 49/74 (66%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL++ + P+ R EI+ +L + + +++D+D+ +A +T GF GA
Sbjct: 990 PDLLDPALLRPGRLDRLLLCDFPSPPERLEILTVLSRKLLMADDIDLEPIALMTEGFSGA 1049
Query: 442 DLQALVNKASTYAV 483
DLQAL++ A AV
Sbjct: 1050 DLQALLSDAQLAAV 1063
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+R++F +A AAAP +LF DE D++ R H + R+V Q
Sbjct: 926 VRDIFSKAAAAAPCILFFDEFDSIAPKRGHDNTGVTDRVVNQ 967
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 67.7 bits (158), Expect = 8e-12
Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLS-EDVDMNILAQVTPGFVG 438
PD+++PALRR GRL++EI +G+P+ R +I++I+ + + S ++ + LA T GFVG
Sbjct: 530 PDSIEPALRRPGRLDREIEIGVPSSTQRSDILHIILRGMRHSLSNIQVEQLAMATHGFVG 589
Query: 439 ADLQALVNKASTYAVKR 489
ADL AL +A+ ++R
Sbjct: 590 ADLSALCCEAAFVCLRR 606
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +2
Query: 74 ELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
E+F A A P+V+FID++DA+ R +++ +RMVA
Sbjct: 468 EVFRSASNATPAVVFIDDLDAIAPARKEGGEELSQRMVA 506
Score = 35.1 bits (77), Expect = 0.055
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF +A+A APS++F DEID++ R
Sbjct: 806 VRSLFAKARANAPSIIFFDEIDSLASIR 833
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/75 (36%), Positives = 48/75 (64%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL++++ G+P L++R +I I + + D+ +LA++ P GA
Sbjct: 317 PDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGA 376
Query: 442 DLQALVNKASTYAVK 486
D++++ +A YA++
Sbjct: 377 DIRSVCTEAGMYAIR 391
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RELF+ A++ ++F DE+DA+ G R
Sbjct: 250 VRELFQMARSKKACIVFFDEVDAIGGAR 277
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LD AL R GR ++++++ +P +K R +I+ + N DV + I+A TPGF GAD
Sbjct: 376 DILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHAGNKKFDNDVSLEIIAMRTPGFSGAD 435
Query: 445 LQALVNKASTYAVKRIFSEI 504
L L+N+A+ A +R + I
Sbjct: 436 LANLLNEAAILAGRRARTSI 455
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R+LF++A+ AP ++F+DEIDAV
Sbjct: 307 RVRDLFKKAKENAPCIVFVDEIDAV 331
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/78 (39%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM--NILAQVTPGFV 435
P+ALD AL R GR +++ + P + R++I+ I +++ L ED + +++A +TPGFV
Sbjct: 479 PEALDSALCRPGRFSRKVLVAEPDQEGRRKILAIHLRDVPLEEDAFLICDLVASLTPGFV 538
Query: 436 GADLQALVNKASTYAVKR 489
GADL +VN+A+ A +R
Sbjct: 539 GADLANIVNEAALLAARR 556
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
RIR+LF A+ +PS++FIDE+DAV G R + D + + Q
Sbjct: 414 RIRDLFNAARKNSPSIIFIDELDAVGGKRGRSFNDERDQTLNQ 456
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
DA+DPALRRAGR + + + P + R +I+ + K + L VD+ +A G+VGAD
Sbjct: 175 DAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTKKVNLDPSVDLQAIAISCNGYVGAD 234
Query: 445 LQALVNKASTYAVKR 489
L+AL +A+ A KR
Sbjct: 235 LEALCREATISASKR 249
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/75 (37%), Positives = 48/75 (64%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P A+D AL R GR + + + P L+AR EI+ + +N+TL +DVD+ +A+ T F GA
Sbjct: 436 PYAIDAALMRPGRFDLVLYVPPPDLEARFEILQVHTRNMTLGDDVDLRKIAEETDLFTGA 495
Query: 442 DLQALVNKASTYAVK 486
+L+ L ++ T +++
Sbjct: 496 ELEGLCRESGTVSLR 510
Score = 34.7 bits (76), Expect = 0.073
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Frame = +2
Query: 68 IRELFERAQAAA----PSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
+RE F A + A PSV+FIDEID +C R A+++ + R+ +Q
Sbjct: 104 LREAFAEASSHAVSDKPSVIFIDEIDVLCPRR-DARREQDVRIASQ 148
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R F+RA+ A+PS++F DE D V R
Sbjct: 368 LRNTFQRARLASPSIIFFDEADVVACKR 395
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/73 (42%), Positives = 47/73 (64%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P++LD AL R GR ++ I + P ++ R++I+ + +EDVD+ I+A+ TPGF GA
Sbjct: 372 PESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKAEDVDLMIIARGTPGFSGA 431
Query: 442 DLQALVNKASTYA 480
DL LVN A+ A
Sbjct: 432 DLANLVNVAALKA 444
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
R+R+LF A+ +P ++FIDEIDA+ G+R
Sbjct: 307 RVRDLFSAAKKCSPCIIFIDEIDAIGGSR 335
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEI--INILCKNITLSEDVDMNILAQVTPGFVG 438
D LDPALRR GR ++ +T+ P R+ I +++ K + L +DV++ +A +T GF G
Sbjct: 475 DVLDPALRRPGRFDRVVTVETPDKIGRESILRVHVSKKELPLGDDVNLGSIASMTTGFTG 534
Query: 439 ADLQALVNKASTYAVKR 489
ADL LVN+A+ A ++
Sbjct: 535 ADLANLVNEAALLAGRK 551
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
R+R+LF RA+ APS++FIDEIDAV +R
Sbjct: 405 RVRDLFARAKKEAPSIIFIDEIDAVAKSR 433
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/75 (37%), Positives = 46/75 (61%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LD AL R GR ++++++ +P +K R +I+ + N V + ++A TPGF GAD
Sbjct: 369 DILDSALLRPGRFDRQVSVDVPDVKGRTDILKVHSGNKKFESGVSLEVIAMRTPGFSGAD 428
Query: 445 LQALVNKASTYAVKR 489
L L+N+A+ A +R
Sbjct: 429 LANLLNEAAILAGRR 443
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R+LF++A+ AP ++F+DEIDAV
Sbjct: 300 RVRDLFKKAKENAPCIVFVDEIDAV 324
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEI--INILCKNITLSEDVDMNILAQVTPGFVG 438
D LDPALRR GR ++ +T+ P R+ I +++ K + L +DV++ +A +T GF G
Sbjct: 479 DVLDPALRRPGRFDRVVTVESPDKVGRESILKVHVSKKELPLGDDVNLASIASMTTGFTG 538
Query: 439 ADLQALVNKASTYAVKR 489
ADL LVN+A+ A ++
Sbjct: 539 ADLANLVNEAALLAGRK 555
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
R+R+LF RA+ APS++FIDEIDAV +R
Sbjct: 409 RVRDLFARAKKEAPSIIFIDEIDAVAKSR 437
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LD R+GR+++ + +G+P K R +I + L+ED+D L T GF GA
Sbjct: 645 PDELDLEFVRSGRIDRRLYIGLPDAKQRVQIFGVHSAGKNLAEDIDFGKLVFRTVGFSGA 704
Query: 442 DLQALVNKASTYAVKRIFSEIHE 510
D++ LVN+A+ +V++ S I++
Sbjct: 705 DIRNLVNEAAIMSVRKGRSYIYQ 727
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKR 181
+I E+F A+ AP+ +F+DEIDA+ G HA+KD +R
Sbjct: 572 KINEMFSIARRNAPAFVFVDEIDAIAGR--HARKDPRRR 608
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL+++I + +P ++R EI+ I I ++D + ++ GF GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGA 347
Query: 442 DLQALVNKASTYAVK 486
DL+ + +A +A++
Sbjct: 348 DLRNICTEAGMFAIR 362
Score = 34.3 bits (75), Expect = 0.097
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IRE+F A+ P ++F+DEIDA+ G R
Sbjct: 221 IREMFNYAREHQPCIIFMDEIDAIGGRR 248
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/80 (37%), Positives = 47/80 (58%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R GR +++I + P K R +I+ I + +S+ VD++ A PG+ GA
Sbjct: 587 DLLDPALLRPGRFDRKIRVRPPNAKGRLDILKIHASKVKMSDSVDLSSYASNLPGWSGAK 646
Query: 445 LQALVNKASTYAVKRIFSEI 504
L LV +A+ AV++ + I
Sbjct: 647 LAQLVQEAALVAVRKTHNSI 666
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
RIR+LF+RA+ PSV+FIDEIDA+ R
Sbjct: 510 RIRDLFKRAKVNKPSVIFIDEIDALATRR 538
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/75 (34%), Positives = 46/75 (61%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL+++I + +P ++R +I+ I I ++D + ++ GF GA
Sbjct: 288 PDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGA 347
Query: 442 DLQALVNKASTYAVK 486
DL+ + +A +A++
Sbjct: 348 DLRNICTEAGMFAIR 362
Score = 34.3 bits (75), Expect = 0.097
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IRE+F A+ P ++F+DEIDA+ G R
Sbjct: 221 IREMFNYAREHQPCIIFMDEIDAIGGRR 248
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GRL++++ +P L+ R +I I + ++ D+ +LA + P GA
Sbjct: 354 PDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGA 413
Query: 442 DLQALVNKASTYAV 483
D++++ +A YA+
Sbjct: 414 DIRSVCIEAGMYAI 427
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+RELF+ A++ +LF DEIDA+ G R
Sbjct: 287 VRELFQMARSKKACILFFDEIDAIGGAR 314
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/74 (36%), Positives = 45/74 (60%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
++LDPAL R GR++++I +P +K R+ I I +TLSEDV++ F GAD
Sbjct: 338 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGAD 397
Query: 445 LQALVNKASTYAVK 486
++A+ +A A++
Sbjct: 398 IKAICTEAGLLALR 411
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+RELF A +PS++FIDEIDAV R A E+ +
Sbjct: 270 VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREI 308
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM--NILAQVTPGFV 435
PD LD AL R GR +++IT+ P +K R +I I K I L + LA +TPGF
Sbjct: 470 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFA 529
Query: 436 GADLQALVNKASTYAVK 486
GAD+ + N+A+ A +
Sbjct: 530 GADIANVCNEAALIAAR 546
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R LF+ A+ AAPS++FIDEIDA+
Sbjct: 402 RVRHLFQEARQAAPSIIFIDEIDAI 426
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R+GRL+++I PT +AR I+ I + + ++ DV+ LA+ T F GA
Sbjct: 320 DILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQ 379
Query: 445 LQALVNKASTYAVKRIFSEI-HE 510
L+A+ +A A++R +E+ HE
Sbjct: 380 LKAVCVEAGMLALRRDATEVNHE 402
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQ 163
+R+ F A+ +P ++FIDEIDA+ R ++
Sbjct: 252 VRDAFLLAKEKSPCIIFIDEIDAIGTKRFDSE 283
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM--NILAQVTPGFV 435
PD LD AL R GR +++IT+ P +K R +I I K I L + LA +TPGF
Sbjct: 476 PDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFA 535
Query: 436 GADLQALVNKASTYAVK 486
GAD+ + N+A+ A +
Sbjct: 536 GADIANVCNEAALIAAR 552
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R LF+ A+ APS++FIDEIDA+
Sbjct: 407 RVRNLFQEARQCAPSIIFIDEIDAI 431
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 58.8 bits (136), Expect = 4e-09
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R+GRL+++I PT +AR I+ I + + + DV+ LA+ T F GA
Sbjct: 321 DILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQ 380
Query: 445 LQALVNKASTYAVKRIFSEI-HE 510
L+A+ +A A++R +E+ HE
Sbjct: 381 LKAVCVEAGMLALRRDATEVNHE 403
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQ 163
+R+ F+ A+ AP ++FIDEIDA+ R ++
Sbjct: 253 VRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSE 284
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 58.0 bits (134), Expect = 7e-09
Identities = 26/74 (35%), Positives = 45/74 (60%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
++LDPAL R GR++++I +P +K R+ I I +TL+EDV++ F GAD
Sbjct: 338 ESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGAD 397
Query: 445 LQALVNKASTYAVK 486
++A+ +A A++
Sbjct: 398 IKAICTEAGLLALR 411
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+RELF A +PS++FIDEIDAV R A E+ +
Sbjct: 270 VRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREI 308
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLS-EDVDMNILAQVTPGFVG 438
PDA+DPALRR GR ++EI +P++ R II++ + + +A+ T GF G
Sbjct: 870 PDAIDPALRRPGRFDREIYFPLPSVDDRAAIISLHTRKWPKPVSGYLLKWIAKETAGFAG 929
Query: 439 ADLQALVNKASTYAVKRIF 495
AD+QAL +A+ A+ R F
Sbjct: 930 ADIQALCTQAAMIALNRSF 948
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
++R LF+ A+ PS++F DEID + R Q +V+
Sbjct: 805 QLRLLFQVAEKCQPSIIFFDEIDGLAPKRSRQQDQTHSSVVS 846
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
PD LDPAL R GR +++I + P L R EI+ + + ++ED+D +A +T G VGA
Sbjct: 558 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILQVHARKKPMAEDLDYMAVASMTDGMVGA 617
Query: 442 DLQALVNKAS 471
+L +V A+
Sbjct: 618 ELANIVEIAA 627
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAV 139
R+R L++ A+ APSV+FIDE+DAV
Sbjct: 490 RVRALYQEARENAPSVVFIDELDAV 514
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINI----LCKNITLSEDVDMNILAQVTPGF 432
D LD AL R GRLE ++ + +P R +I+ I + +N L D+++ LA T +
Sbjct: 374 DLLDEALLRPGRLEVQVEISLPDEAGRLQILQIHTNKMKENSFLGTDINLQELAARTKNY 433
Query: 433 VGADLQALVNKASTYAVKRIFS 498
GA+L+ +V A++YA+ R S
Sbjct: 434 SGAELEGVVKSATSYALNRQLS 455
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R RL Q +GIP + R EI+ + K + D+D + +A++ G+ G+
Sbjct: 233 PSELDEAILR--RLPQAFEIGIPDRRERAEILKVTLKGERVEPDIDFDHIARLCEGYTGS 290
Query: 442 DLQALVNKASTYAVKRI 492
D+ L KA+ + ++ I
Sbjct: 291 DIFELCKKAAYFPIREI 307
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGI-PTLKARKEIINILCKNITLSEDVDMNILAQVTPG-FV 435
PD +DPAL R GR ++ + +G+ R+ ++ L + LSEDV + +A+ P F
Sbjct: 806 PDLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVAKKCPSTFT 865
Query: 436 GADLQALVNKASTYAVKRIFSE 501
GAD+ AL A A KR S+
Sbjct: 866 GADMYALCADAWFQAAKRKVSK 887
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R++FE+A++A P V+F DE+D++ R
Sbjct: 739 VRDIFEKARSARPCVIFFDELDSLAPAR 766
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNIT----LSEDVDMNILAQVTPGF 432
+ + P +RR EI +G + R E+++ + ++ +S D M L T GF
Sbjct: 517 EGISPTIRRC--FSHEIRMGSLNDEQRSEMLSQSLQGVSQFLNISSDEFMKGLVGQTSGF 574
Query: 433 VGADLQALVNKA 468
+ DLQALV A
Sbjct: 575 LPRDLQALVADA 586
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/76 (35%), Positives = 46/76 (60%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P +D ALRR RLE+ I + +P ++RK +INI + + ++ DV++ +A+ T G+ G
Sbjct: 393 PWDIDEALRR--RLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGD 450
Query: 442 DLQALVNKASTYAVKR 489
DL + AS ++R
Sbjct: 451 DLTNVCRDASMNGMRR 466
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF+ A+A APS +FIDEID++C +R
Sbjct: 320 VRCLFDLARAYAPSTIFIDEIDSLCNSR 347
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM-NILAQVTPGFVGA 441
DA+D ALRR GR ++E +P +AR EI++I + ++ LA G+ GA
Sbjct: 533 DAIDGALRRPGRFDREFNFSLPGCEARAEILDIHTRKWKHPPTRELKEELAATCVGYCGA 592
Query: 442 DLQALVNKASTYAVKRIFSEIH 507
DL+AL +A+ A + + +++
Sbjct: 593 DLKALCTEAAIRAFREKYPQVY 614
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVA 190
+++ LFE AQ PS++F DEID + R Q+ + +V+
Sbjct: 467 QLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVS 508
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKN-ITLSEDVDMNILAQV---TPGF 432
D LDPAL R GR ++ I +G+P+ R I+ + +N SED +L +V T F
Sbjct: 467 DILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKFFRSEDEKEELLQEVAENTEDF 526
Query: 433 VGADLQALVNKASTYAVKR 489
GA+LQ ++N+A ++
Sbjct: 527 TGAELQNVLNEAGILTARK 545
Score = 36.7 bits (81), Expect = 0.018
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +2
Query: 65 RIRELFERAQAAAPSVLFIDEIDAVCGNR 151
R+++LF +++ APS++FIDEIDA+ R
Sbjct: 396 RVKDLFASSRSYAPSIIFIDEIDAIGSKR 424
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEII-NILCKN--ITLSEDVDMNILAQVTPGF 432
P LD A RR RL + + + +P+ +AR II N+L K+ TLS+D DMNI+ +T G+
Sbjct: 157 PQELDEAARR--RLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSDD-DMNIICNLTEGY 213
Query: 433 VGADLQALVNKAS 471
G+D++ LV A+
Sbjct: 214 SGSDMKNLVKDAT 226
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF A P+V+F+DEID++ R
Sbjct: 91 VRALFGVASCRQPAVIFVDEIDSLLSQR 118
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGAD 444
D LDPAL R GRL+++I +P + ++ + + + LS++VD+ A+
Sbjct: 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAE 364
Query: 445 LQALVNKASTYAVKR 489
+ A+ +A +AV++
Sbjct: 365 IAAICQEAGMHAVRK 379
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRM 184
+R++F A+ AP+++FIDE+DA+ R AQ ++ +
Sbjct: 237 VRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREV 275
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R R E+ I +G+P ++ R++I+ L + E++D LA +T G+ G+
Sbjct: 670 PFDLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGS 727
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ L A+ V+ + +
Sbjct: 728 DLKNLCTTAAYRPVRELIQQ 747
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF A +P+++F+DE+D++ G R
Sbjct: 603 VRALFTLASKVSPTIIFVDEVDSMLGQR 630
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/80 (31%), Positives = 45/80 (56%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R R E+ I +G+P ++ R++I+ L + E++D LA +T G+ G+
Sbjct: 665 PFDLDEAIIR--RFERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGYTGS 722
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ L A+ V+ + +
Sbjct: 723 DLKNLCTTAAYRPVRELIQQ 742
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF A +P+++F+DE+D++ G R
Sbjct: 598 VRALFTLASKVSPTIIFVDEVDSMLGQR 625
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/80 (31%), Positives = 47/80 (58%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R R E+ I +G+P++++R++I+ L +E++D LAQ+T G+ G+
Sbjct: 563 PFDLDEAIIR--RFERRIMVGLPSVESREKILRTLLSK-EKTENLDFQELAQMTDGYSGS 619
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ A+ V+ + +
Sbjct: 620 DLKNFCTTAAYRPVRELIKQ 639
Score = 32.7 bits (71), Expect = 0.29
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+R LF A +P+++F+DE+D++ G R
Sbjct: 496 VRALFTLAAKVSPTIIFVDEVDSMLGQR 523
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/77 (25%), Positives = 43/77 (55%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R R Q +G+P + R +I+ ++ K ++ D++ + +A++ + G+
Sbjct: 236 PSELDEAILR--RFPQSFEIGMPDCQERAQILKVVLKGESVESDINYDRIARLCEDYTGS 293
Query: 442 DLQALVNKASTYAVKRI 492
D+ L KA+ + ++ I
Sbjct: 294 DIFELCKKAAYFPIREI 310
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
+ +F A P+++FIDE+D+ G R
Sbjct: 170 VSAVFSLAYKLQPAIIFIDEVDSFLGQR 197
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/80 (28%), Positives = 45/80 (56%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R RL + + + +P R +I++++ ++EDVD+ +A +T G+ G+
Sbjct: 1100 PFDLDEAVIR--RLPRRLMVNLPDSANRSKILSVILAKEEMAEDVDLEAIANMTDGYSGS 1157
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ L A+ ++ I +
Sbjct: 1158 DLKNLCVTAAHLPIREILEK 1177
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
++ +F A APSV+F+DE+D++ G R
Sbjct: 1033 VKAVFSLASKIAPSVIFVDEVDSMLGRR 1060
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/80 (27%), Positives = 45/80 (56%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R RL + + + +P R +I++++ ++ DVD+ +A +T G+ G+
Sbjct: 1113 PFDLDEAVIR--RLPRRLMVNLPDATNRSKILSVILAKEEIAPDVDLEAIANMTDGYSGS 1170
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ L A+ + ++ I +
Sbjct: 1171 DLKNLCVTAAHFPIREILEK 1190
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
++ +F A APSV+F+DE+D++ G R
Sbjct: 1046 VKAVFSLASKIAPSVIFVDEVDSMLGRR 1073
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam
profile PF00004: ATPase, AAA family
Length = 1122
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMNILAQVTPGFVGA 441
P LD A+ R RL + + +G+P R I+ ++ LS D+D+ +A +T G+ G+
Sbjct: 970 PFDLDEAVIR--RLPRRLMVGLPDTSNRAFILKVILAKEDLSPDLDIGEIASMTNGYSGS 1027
Query: 442 DLQALVNKASTYAVKRIFSE 501
DL+ L A+ +K I +
Sbjct: 1028 DLKNLCVTAAHRPIKEILEK 1047
Score = 35.9 bits (79), Expect = 0.032
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMV 187
++ +F A +PSV+F+DE+D++ G R H ++ R +
Sbjct: 903 VKAVFSLASKMSPSVIFVDEVDSMLGRREHPREHEASRKI 942
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMV 187
+ LFE A+ +APS++F+DEID++CG R + R +
Sbjct: 213 VSNLFEMARESAPSIIFVDEIDSLCGTRGEGNESEASRRI 252
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 38.3 bits (85), Expect = 0.006
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 262 PDALDPALRRAGRLEQEITLGIPTLKARKEIIN--ILCKNITLSEDVDMNILAQVTPGFV 435
P LD A+ R RL + I + +P RK + + C+ +LS D D++ + + T G+
Sbjct: 363 PQELDDAVLR--RLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLS-DGDIDKIVKETEGYS 419
Query: 436 GADLQALVNKASTYAVKRIFSEI 504
G+DLQAL +A+ ++ + + I
Sbjct: 420 GSDLQALCEEAAMMPIRELGANI 442
Score = 34.7 bits (76), Expect = 0.073
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHAQKDMEKRMVAQ 193
++ LF+ A + PSV+F+DEID++ R ++ + +R+ ++
Sbjct: 297 VKTLFQVAISRQPSVIFMDEIDSIMSTRSTSENEASRRLKSE 338
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHA 160
+RELF A+ APS++F+DEID++ R+ +
Sbjct: 243 VRELFVMAREHAPSIIFMDEIDSIGSARMES 273
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 34.7 bits (76), Expect = 0.073
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNRIHA 160
+RELF A+ APS++F+DEID++ R+ +
Sbjct: 243 VRELFVMAREHAPSIIFMDEIDSIGSARMES 273
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 34.3 bits (75), Expect = 0.097
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IR LF+ A+ APS +F+DEIDA+ R
Sbjct: 193 IRVLFDLARHHAPSTIFLDEIDAIISQR 220
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 34.3 bits (75), Expect = 0.097
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR 151
IR LF+ A+ APS +F+DEIDA+ R
Sbjct: 184 IRVLFDLARHHAPSTIFLDEIDAIISQR 211
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 68 IRELFERAQAAAPSVLFIDEIDAVCGNR---IHAQKDMEKRMVAQ 193
+RELF+ A+ AP ++F+++ D G R +H ++ + + Q
Sbjct: 506 VRELFQTARDLAPVIIFVEDFDLFAGVRGKFVHTKQQDHESFINQ 550
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 271 LDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM 402
+D ALRR GR+++ L PT R+ I++ + E VD+
Sbjct: 576 IDEALRRPGRMDRVFHLQSPTEMERERILHNAAEETMDRELVDL 619
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 71 RELFERAQAAAPSVLFIDEIDAVCGNR 151
+ LF A AP ++F+DE+D++ G R
Sbjct: 234 KALFSFASKLAPVIIFVDEVDSLLGAR 260
>At2g38370.1 68415.m04714 expressed protein
Length = 522
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 325 IPTLKARKEIINILCKNITLSEDVDMNI 408
+P LK I IL K + L+ED DMN+
Sbjct: 424 VPVLKPTMSIGQILSKKLLLAEDSDMNV 451
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 71 RELFERAQAAAPSVLFIDEIDAVCGNR 151
+ LF A AP ++F+DEID++ G R
Sbjct: 435 KALFSFATKLAPVIIFVDEIDSLLGAR 461
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDMN 405
+ LDPAL R+GR++ I + T + + IL +N E+ D+N
Sbjct: 366 EKLDPALLRSGRMDMHIHMSYCTFSS----VKILLRNYLGFEEGDLN 408
>At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 686
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 737 VTA*HPLPVPSVKSWLALIS*WVQIGSCSSVGF 639
VT H +P P+V SW LIS +V GS ++ F
Sbjct: 193 VTLFHRMPQPNVVSWNCLISGFVDKGSPRALEF 225
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM 402
D LDPAL R GR++ I + R E +L KN +E D+
Sbjct: 358 DNLDPALIRRGRMDYHIEMSY----CRFEAFKVLAKNYLENESHDL 399
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM 402
D LDPAL R GR++ I + R E +L KN E D+
Sbjct: 373 DKLDPALIRRGRMDNHIEMSY----CRFEAFKVLAKNYLEIESHDL 414
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 265 DALDPALRRAGRLEQEITLGIPTLKARKEIINILCKNITLSEDVDM 402
D LDPAL R GR+++ I + +A K +L KN E+ +M
Sbjct: 373 DKLDPALIRKGRMDKHIEMSYCCFEAFK----VLAKNYLDVEESEM 414
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,658,499
Number of Sequences: 28952
Number of extensions: 236048
Number of successful extensions: 704
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -