Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BRB3 Cluster: Debaryomyces hansenii chromosome D of s...    35   2.3  
UniRef50_Q6G8M4 Cluster: DNA polymerase III subunit alpha; n=16;...    34   4.1  
UniRef50_Q975Z6 Cluster: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotr...    33   9.5  

>UniRef50_Q6BRB3 Cluster: Debaryomyces hansenii chromosome D of
           strain CBS767 of Debaryomyces hansenii; n=2;
           Saccharomycetaceae|Rep: Debaryomyces hansenii chromosome
           D of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 742

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 348 RKKQSNSDSNLNIINTIVTISNKTHLNFR-YGYGSTKY-KEQFPSKTEIK 205
           +KK+  +D  +N+ NT VT +N TH +   +G+   KY KE  PS ++ K
Sbjct: 83  KKKEKENDEFVNVPNTNVTSNNTTHTSSADHGHKLNKYHKEAHPSNSKSK 132


>UniRef50_Q6G8M4 Cluster: DNA polymerase III subunit alpha; n=16;
           Staphylococcus|Rep: DNA polymerase III subunit alpha -
           Staphylococcus aureus (strain MSSA476)
          Length = 1065

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 405 FRILTHRGVKDYLVIISDIFENSQESHSNFKIGNNIXTNKMFSYLNGVSLIE 560
           ++++T+ G +DY +I+SD+   ++ +      G       + SYL G++ I+
Sbjct: 275 YKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTID 326


>UniRef50_Q975Z6 Cluster: Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B; n=6; Thermoprotei|Rep:
           Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit
           B - Sulfolobus tokodaii
          Length = 479

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
 Frame = +3

Query: 399 KIFRILTHRGVKDY----LVI---ISDIFENSQESHSNFKIGNNIXTNKMFSYLNGVSLI 557
           +I R++T  G+ DY    LV+   ++D+FE + + +SN+K   N+  N    +LN  +L 
Sbjct: 304 RIKRLVTQYGISDYDATVLVMDKALADLFEETAKHYSNYKKLVNLLINDYLRWLNDKNLR 363

Query: 558 EVQLKTSN 581
             Q K  +
Sbjct: 364 PSQSKAGS 371


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 693,987,648
Number of Sequences: 1657284
Number of extensions: 14083821
Number of successful extensions: 29344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29335
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)