Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    27   2.1  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   2.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.6  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   8.4  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   8.4  
SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit ...    25   8.4  

>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 100 GLIRFQGPFFEVVDTIFCLFCWVHVFL*VLLKKFTFYFSFTWKLFLVF 243
           G  R+  P ++     F L   +H+F  ++    + + S+TW  FL+F
Sbjct: 367 GTDRYSLPLYKTHARRFSLSTTIHLFKKIVRITLSTFISYTWIPFLLF 414


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 262 AKIQMGLIADSYNGIYYIE 318
           + IQ+G I DS+N +YY E
Sbjct: 92  SNIQLGSITDSWNSVYYSE 110


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 372 YYHGSDPWRKKQSNSDSNLNIINTIVTISNKTH-LNFRYGYGSTKY 238
           YY  S  +R+K    D N N  N    I N T+ +N   G  S  Y
Sbjct: 104 YYKNSQGYRRKPKRDDYNNNRKNFYPPIQNSTYFINATGGIDSMPY 149


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 166 VHVFL*VLLKKFTFYFSFTWKLFLVFC*TVSVAKIQMGL 282
           VH  + +LL   ++YF FTW    VF  T+  + I + L
Sbjct: 227 VHHIITLLLIGLSYYFHFTWIGLAVFI-TMDTSDIWLAL 264


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 685 IPXXYIHMHVVKKRLFQYYKQAHPI 611
           +P  Y  +H+  KRL++Y ++  P+
Sbjct: 189 LPPLYSALHIQGKRLYEYAREGIPL 213


>SPAC17G6.09 |sec62||ER protein translocation subcomplex subunit
           Sec62 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 85  WYLNEGLIRFQGPFFEVVDTIFCLFC 162
           WYL+ G +   G FF +V   F LFC
Sbjct: 162 WYLSMGGLGVIGLFFVLVILRFFLFC 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,464
Number of Sequences: 5004
Number of extensions: 66334
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)