Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128...    29   5.0  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    29   5.0  

>11_01_0154 +
           1281434-1281725,1281923-1281987,1282112-1282175,
           1282303-1282449,1282583-1282677,1284358-1284465
          Length = 256

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 162 LGPCFPVSSPKKIYVLFQFYLETVPCILLNRIRSENSNGS 281
           L P  P SS    Y    F L     + +NR+ S NSNGS
Sbjct: 24  LPPPPPCSSSSSSYASHGFKLLQPQLLFINRLTSRNSNGS 63


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 464 KDVANNNQIVFHPSM--SQYAKNLLVLYQHILDIIMDRILGA 345
           +D + N QI+   S+  S+YAKNL +  Q  ++II   +LG+
Sbjct: 59  EDASQNKQIINTNSLYLSRYAKNLNMNSQQRIEIIKPELLGS 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,137,316
Number of Sequences: 37544
Number of extensions: 326996
Number of successful extensions: 471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)