Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   8.9  
SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)                  28   8.9  
SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)           28   8.9  
SB_21352| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)         28   8.9  

>SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -3

Query: 408 EKSFGIISAYP*YYHGSDPWRKKQSNSDSNLNIINTIVTISNKTH--LNFRYGYGSTKYK 235
           E SF I       +HG + W K   N   +      I   + K H   N +YGYG T +K
Sbjct: 527 EFSFLIAKRNVKLFHGINSWNKISENVRHSFGFFVWITLSNRKRHKRYNNKYGYGVTAFK 586


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 431 HP-SMSQYAKNLLVLYQHILDIIMDRILGAKNNQIAIQTSI 312
           HP S   +  NLL+   H  DI+ D+I+  +    A+Q+ +
Sbjct: 291 HPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSKL 331


>SB_48497| Best HMM Match : THAP (HMM E-Value=0.00088)
          Length = 866

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 431 HP-SMSQYAKNLLVLYQHILDIIMDRILGAKNNQIAIQTSI 312
           HP S   +  NLL+   H  DI+ D+I+  +    A+Q+ +
Sbjct: 296 HPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSKL 336


>SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)
          Length = 705

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 431 HP-SMSQYAKNLLVLYQHILDIIMDRILGAKNNQIAIQTSI 312
           HP S   +  NLL+   H  DI+ D+I+  +    A+Q+ I
Sbjct: 419 HPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSII 459


>SB_21352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 431 HP-SMSQYAKNLLVLYQHILDIIMDRILGAKNNQIAIQTSI 312
           HP S   +  NLL+   H  DI+ D+I+  +    A+Q+ +
Sbjct: 11  HPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSKL 51


>SB_16017| Best HMM Match : Peptidase_A17 (HMM E-Value=1.2e-19)
          Length = 879

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 431 HP-SMSQYAKNLLVLYQHILDIIMDRILGAKNNQIAIQTSI 312
           HP S   +  NLL+   H  DI+ D+I+  +    A+Q+ +
Sbjct: 418 HPVSSGNFEINLLIGADHYWDIVQDKIIRGEEGPTAMQSKL 458


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,010,260
Number of Sequences: 59808
Number of extensions: 413092
Number of successful extensions: 701
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)