Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z68748-7|CAJ85749.1|   80|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alp...    28   7.9  

>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -3

Query: 333 NSDSNLNIINTIVTISNKTHLNFRYGYGSTKYKEQFP 223
           N D+NLNI N I+ ISN+T +  R+G   T Y++  P
Sbjct: 344 NVDNNLNINNQIMAISNETSMVARHGRVIT-YEDSAP 379


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +2

Query: 152 VYFVGSMFSCKF--S*KNLRFISVLLGNCSLYFVEPYP*RKFKWVLLLIV------TMVF 307
           ++F+       F  S  N+  I  +  +C+ YF+E Y  +   W+ LLI+      TM+F
Sbjct: 129 LFFIAGFLKIHFGLSMSNILLIVSVERSCASYFLEDYENKSRTWIALLIIFFSQTFTMIF 188

Query: 308 IILRF 322
            I+ F
Sbjct: 189 SIVFF 193


>Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical
           protein K06A4.1 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 372 YYHGSDPWRKKQSNSDSNLNIINTIVTISNKTHLNF 265
           Y  GS PW+K+   S S++  INT+   +N+    F
Sbjct: 221 YNFGSVPWQKRDYFSPSDIRNINTLYKCNNRVVSKF 256


>Z68748-7|CAJ85749.1|   80|Caenorhabditis elegans Hypothetical
           protein F13H10.8 protein.
          Length = 80

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 236 LYFVEPYP*RKFKWVLLLIVTMVFIILRF 322
           +Y +EP+  R F WV++ ++T    ++ F
Sbjct: 49  IYMLEPWEQRLFNWVIIFVLTTFISLITF 77


>Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical
           protein B0365.3 protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 88  YLNEGLIRFQGPFFEVVDTIFCLFCWVHVFL*VLLKKFTFYFSFTWKLFLVFC*TVSVAK 267
           +L  GL     P    ++    L   V VFL +      F   + W   +VF   + VA 
Sbjct: 250 HLASGLDTGMTPIAREIEHFIHLITGVAVFLGISFFIIAFILGYHWLTAVVFLIGIIVAN 309

Query: 268 IQMGLIA 288
           +  GLIA
Sbjct: 310 VPEGLIA 316


>U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alpha
           subunit protein.
          Length = 996

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/67 (28%), Positives = 27/67 (40%)
 Frame = +1

Query: 88  YLNEGLIRFQGPFFEVVDTIFCLFCWVHVFL*VLLKKFTFYFSFTWKLFLVFC*TVSVAK 267
           +L  GL     P    ++    L   V VFL +      F   + W   +VF   + VA 
Sbjct: 250 HLASGLDTGMTPIAREIEHFIHLITGVAVFLGISFFIIAFILGYHWLTAVVFLIGIIVAN 309

Query: 268 IQMGLIA 288
           +  GLIA
Sbjct: 310 VPEGLIA 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,414,779
Number of Sequences: 27780
Number of extensions: 351932
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)