Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0294
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.8  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 160 CWVHVFL*VLLKKFTFYF 213
           CW++V+  V+L    FYF
Sbjct: 71  CWMNVYYIVILAWAIFYF 88


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 647 LFYYMHMNIXTGY 685
           LFYYMH  I   Y
Sbjct: 233 LFYYMHQQIMARY 245


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 445 LLLATSLKIHRRAIQTLKLGII 510
           ++LAT + +HR + Q   +G I
Sbjct: 290 IVLATGITVHRNSAQQAGVGTI 311


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 445 LLLATSLKIHRRAIQTLKLGII 510
           ++LAT + +HR + Q   +G I
Sbjct: 290 IVLATGITVHRNSAQQAGVGTI 311


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 447 IISDIFENSQESHSNFKIGNNIXTNKMFSYLNGVSLIEV 563
           IIS +   +  +++N+K   N    K++  +N +  I +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,741
Number of Sequences: 438
Number of extensions: 5134
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)