Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0292
         (714 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    39   0.14 
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   3.0  
UniRef50_Q1MZQ5 Cluster: Membrane protein required for beta-lact...    34   4.0  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = -3

Query: 211 MGDGNHSPSGRT*ARLPTRA 152
           MGDGNHSPSGR  A LPTRA
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 20/38 (52%), Positives = 23/38 (60%)
 Frame = -2

Query: 314  FKSEYLISFIKNVLEKLFYLPSQRLASALGIAEVHGRR 201
            F   Y +SF K  L ++     QRL SA GIAEVHGRR
Sbjct: 950  FPERYDMSFFKRGLWRVLS-GRQRLGSAPGIAEVHGRR 986



 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 46   RQRLGSAPGIADFHERR 96
            RQRLGSAPGIA+ H RR
Sbjct: 970  RQRLGSAPGIAEVHGRR 986


>UniRef50_Q1MZQ5 Cluster: Membrane protein required for
           beta-lactamase induction; n=1; Oceanobacter sp.
           RED65|Rep: Membrane protein required for beta-lactamase
           induction - Oceanobacter sp. RED65
          Length = 280

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = -2

Query: 335 FCKLTIHFKSEYLISFIKNVLEKLFYLPSQRLASALGIA 219
           FC L+  F SE  I ++K+VL+ + +LPS+ LA ++ +A
Sbjct: 166 FCLLSYWFYSESKIPWMKSVLDTMEWLPSRLLALSMSLA 204


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,117,682
Number of Sequences: 1657284
Number of extensions: 11955276
Number of successful extensions: 22287
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22280
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)