Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0292
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.2  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         27   3.5  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   6.1  

>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 70  GIADFHERR*PLTIRWAVCSSAYSIILLPLWADELTSYLMVSGYRRPW 213
           GI+D    R    + W +     S   + +W D L +Y+ V GY  PW
Sbjct: 224 GISDLSISRPKQRLSWGIPVPGNSQQTIYVWLDALINYISVIGY--PW 269


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 70  GIADFHERR*---PLTIRWAVCSSAYSIILLPLWADELT 177
           GI D+H R+    P   RW  CS+  S+ +L ++   LT
Sbjct: 352 GIPDYHSRKPSLKPFISRWFNCSANESLPVLEIFGRSLT 390


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 100 PLTIRWAVCSSAYSIILLPLWA 165
           PLT+ WA  SS  + ++ P WA
Sbjct: 326 PLTLDWAQISSLSNPLITPWWA 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,248
Number of Sequences: 5004
Number of extensions: 51644
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)