Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0292
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)                 30   1.6  
SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)                      28   6.5  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             28   6.5  

>SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)
          Length = 452

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 323 TIHFKSEYLISFIKNVLEKLFYLPSQRLASA-LGIAEVH 210
           T+HF SE  ++  KN+ + L Y PSQ  A+  LG++  H
Sbjct: 164 TLHFMSEDYVTATKNLEKSLEYNPSQATATLYLGLSLYH 202


>SB_12604| Best HMM Match : PsbH (HMM E-Value=5.9)
          Length = 105

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 131 DEHTAHLMVSGYRRSWKSAMPGAEPSRCLK 42
           + +T + + +GY   + S  PG EP +CLK
Sbjct: 13  NNNTEYRLQAGYGLRFSSKRPGYEPGQCLK 42


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 570 ITRNDSFLQSNYHWLFFNSMIKKALVHP 487
           +T +D       HWLFFN++ K  ++ P
Sbjct: 461 LTADDRRFWRPVHWLFFNALFKTPILRP 488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,082,083
Number of Sequences: 59808
Number of extensions: 362131
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)