Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0292
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   3.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.8  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFWVVX*IKLKCCDITRNDSFL 547
           I FP  F+ F + +W+   I L   D+  +D  L
Sbjct: 410 IVFPVCFVCFNLMYWI---IYLHISDVVADDLVL 440


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFWVVX*IKLKCCDITRNDSFL 547
           I FP  F+ F + +W+   I L   D+  +D  L
Sbjct: 410 IVFPVCFVCFNLMYWI---IYLHISDVVADDLVL 440


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 714 LVSXPESLEIKNYXLLWTK 658
           L    ++LEIKNY + W K
Sbjct: 95  LYGLTKNLEIKNYNIDWDK 113


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFWVV 598
           I FP  F+ F + +W++
Sbjct: 348 IVFPVCFVCFNLMYWII 364


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFW 604
           I FP +F +F + +W
Sbjct: 421 IFFPIVFAFFNLAYW 435


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFW 604
           I FP +F +F + +W
Sbjct: 421 IFFPIVFAFFNLAYW 435


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFWVV 598
           I FP +F+ F I +W +
Sbjct: 368 IGFPILFMLFIILYWPI 384


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 648 IXFPXIFLYFKIWFW 604
           I FP  F+ F I +W
Sbjct: 450 IVFPVAFIIFNILYW 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,971
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)