Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0289
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 120 2e-28
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 75 9e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 70 3e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 64 1e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 53 3e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 52 6e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 2e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 50 2e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 49 5e-07
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 44 1e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 6e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 1e-04
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 41 1e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 2e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 32 0.063
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 1.4
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 27 2.4
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.2
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc... 26 4.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 25 9.6
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 120 bits (289), Expect = 2e-28
Identities = 56/76 (73%), Positives = 65/76 (85%)
Frame = +3
Query: 276 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 455
PNSPL+SVK+FE L LKP LLKG+Y+M F PSKIQE ALP LL++PP+NMI QSQSGTG
Sbjct: 106 PNSPLFSVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTG 165
Query: 456 KTAAFVLAMLSRVDSN 503
KTAAF L MLSRVD++
Sbjct: 166 KTAAFALTMLSRVDAS 181
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVR 622
PQ +CL+P+ ELA Q +V +M K+ E+K + ++
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKY-TEVKTAFGIK 220
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 74.9 bits (176), Expect = 9e-15
Identities = 33/80 (41%), Positives = 57/80 (71%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ TF+ ++LKP LL+G+YA GF PS IQ+ A+ +L + ++++AQ+QSGTGKTA F +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGE--RDVLAQAQSGTGKTATFSI 75
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++L ++D++ + +L P
Sbjct: 76 SVLQKIDTSLKQCQALILAP 95
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 69.7 bits (163), Expect = 3e-13
Identities = 33/77 (42%), Positives = 54/77 (70%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE +LK LL G++ GF PS IQE ++P L+ ++++A++++GTGKTAAFV+ L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSG--RDILARAKNGTGKTAAFVIPSL 103
Query: 486 SRVDSNKNILKYCVLVP 536
+VD+ K+ ++ +LVP
Sbjct: 104 EKVDTKKSKIQTLILVP 120
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAK 586
Q L L PT ELA+QT +V + K
Sbjct: 114 QTLILVPTRELALQTSQVCKTLGK 137
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 64.5 bits (150), Expect = 1e-11
Identities = 31/81 (38%), Positives = 52/81 (64%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+V +FE ++LK +LL+G+YA G+ PS +Q A+ + +++IAQ+QSGTGKTA F
Sbjct: 19 AVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKG--RDVIAQAQSGTGKTATFS 76
Query: 474 LAMLSRVDSNKNILKYCVLVP 536
+ +L +D + + +L P
Sbjct: 77 IGILQSIDLSVRDTQALILSP 97
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.2 bits (122), Expect = 3e-08
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F+++ L LL+ ++ GF AP+ IQ +P LL ++++ +++G+GKTAAFV+ M+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEG--RDVVGMARTGSGKTAAFVIPMI 128
Query: 486 SRVDS---NKNILKYCVLVPHMN*PYKLVKLLQ 575
+ S N N + +L P+ + VK+++
Sbjct: 129 EHLKSTLANSN-TRALILSPNRELALQTVKVVK 160
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
S KTF +L P L + ++ F P+ +Q +P LA ++++AQ+++G+GKTAA++
Sbjct: 12 SEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIP--LALEGKDLVAQARTGSGKTAAYL 69
Query: 474 LAML------SRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFVLK 599
+ +L ++D N+ + +LVP ++ +L+K F K
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSK 117
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.4 bits (115), Expect = 2e-07
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP LL+ + GF PS++Q+ +P + +++ Q++SG GKTA FVL+ L
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILG--TDVLCQAKSGMGKTAVFVLSTL 110
Query: 486 SR---VDSNKNILKYC 524
+ VD ++L C
Sbjct: 111 QQIEPVDGEVSVLVLC 126
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 518 VLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELSQGFQ 649
VL L T ELA Q A+ +K+ P+++ G + Q +
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDME 165
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/87 (32%), Positives = 49/87 (56%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF+ L + L + +GF P+ IQ+ A+P +L +++I +Q+G+GKTAAF L
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVL--NKRDVIGLAQTGSGKTAAFALP 103
Query: 480 MLSRVDSNKNILKYCVLVPHMN*PYKL 560
++ + +N + VL P Y++
Sbjct: 104 VIQELWNNPSPFFAVVLAPTRELAYQI 130
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 49.2 bits (112), Expect = 5e-07
Identities = 21/64 (32%), Positives = 44/64 (68%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 482
+F++++L +LKG+ +GF P++IQ+ +P L ++++ + +G+GKTAAF++ +
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLG--KDIVGAAVTGSGKTAAFIVPI 317
Query: 483 LSRV 494
L R+
Sbjct: 318 LERL 321
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/60 (33%), Positives = 39/60 (65%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
++ F L L N+ K + MGF ++IQ+ ++P LLA ++++ +++G+GKT AF++
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG--RDVLGAAKTGSGKTLAFLI 145
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 518 VLCLSPTYELAIQTGEVAAKMAKF 589
V+ +SPT ELA+Q VA ++ K+
Sbjct: 164 VIIISPTRELALQIFGVAKELLKY 187
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 42.3 bits (95), Expect = 6e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
++ +E L +LK + + + PS IQ A+P LL +++I +++G+GKTAAF++
Sbjct: 248 LRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQR--KDLIGIAETGSGKTAAFII 305
Query: 477 AML 485
++
Sbjct: 306 PLI 308
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V TFE +LK V +GF AP+ IQ+ A P +A ++M+ S +G+GKT ++ L
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWP--MAMSGRDMVGISATGSGKTLSYCL 178
Query: 477 AMLSRVDS 500
+ +++
Sbjct: 179 PAIVHINA 186
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAK 586
P VL L+PT ELA+Q + K K
Sbjct: 196 PIVLVLAPTRELAVQIQQECTKFGK 220
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/79 (29%), Positives = 43/79 (54%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
K+F L + P L+ + A+ P+ IQE + +L +N I +++G+GKTAAF L
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEG--RNCIGGAKTGSGKTAAFALP 64
Query: 480 MLSRVDSNKNILKYCVLVP 536
++ + + + + +L P
Sbjct: 65 IIEKWSKDPSGIFALILTP 83
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +3
Query: 195 SRYFSFNENHTARSS*I*TRIEIQRKXPNSPLYSVKTFEALHLKPNLLKGVY-AMGFNAP 371
S +FS + + I + I ++ N+P+ + F + L L + M +AP
Sbjct: 105 SEHFSQDVGQNLEDNQI-SNIGTTKEASNAPIKTTN-FAGVQLDTQLADHLNNKMNISAP 162
Query: 372 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
+ IQ LP LL ++ ++Q+G+GKT A++L ++ R+
Sbjct: 163 TAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/64 (29%), Positives = 40/64 (62%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V F + L +LL+ + G+ P+ +Q+ ++P + + ++++A +Q+G+GKTA F+
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSG--RDLMACAQTGSGKTAGFLF 225
Query: 477 AMLS 488
+LS
Sbjct: 226 PILS 229
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/64 (26%), Positives = 38/64 (59%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 482
+F+++++ L V A GF + +Q A+P L + ++++ ++ +G+GKT A++L
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKN--KDLVVEAVTGSGKTLAYLLPC 59
Query: 483 LSRV 494
+V
Sbjct: 60 FDKV 63
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.3 bits (70), Expect = 0.063
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 309 EALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLS 488
E L + GF + +Q+ L + + +N + Q+++GTGKT AF+L
Sbjct: 41 EVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNE-ENAVVQAKTGTGKTLAFLLVAFK 99
Query: 489 RVDSNK 506
V K
Sbjct: 100 DVLKGK 105
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 527 LSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRG 625
LSPT ELA+Q E A K+ + I++ YA+ G
Sbjct: 118 LSPTRELALQIFEEARKLT-YGTGIRVSYAIGG 149
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGE 565
P+VL +SPT ELAIQT E
Sbjct: 237 PRVLVVSPTRELAIQTYE 254
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/45 (24%), Positives = 29/45 (64%)
Frame = +3
Query: 372 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNK 506
++IQ+ +P+ L ++++ +++G+GKT AF++ ++ + K
Sbjct: 63 TEIQKQCIPSALKG--RDILGAAKTGSGKTLAFIVPLIENLYRKK 105
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 521 LCLSPTYELAIQTGEVAAKMAK 586
L +SPT ELAIQT E K+ +
Sbjct: 115 LVISPTRELAIQTFETLVKIGR 136
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 505 LLESTLLNIAKTKAAVFPVPDCDW 434
++E +LLN A A FP DW
Sbjct: 290 MMEQSLLNFAYNSAGAFPWESLDW 313
>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 555
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 431
S F A LK + + A N P+ ++ T + T+L P QN++
Sbjct: 357 SENPFIAHELKQTSVNEITAHVINEPASLKLTTISTILHAPLQNLL 402
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 354 MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDS 500
+ + ++IQ P + +NM+ + +G GKT +LAML + +
Sbjct: 273 LSYQTLNRIQSLVYP-IAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 136 LDKKHNQETDSDDVPDTPNAADTSLLMKIIRQGLVESKLE*K 261
+D+ + D +PDTP+A+ + + LVE + + K
Sbjct: 865 VDRSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQIK 906
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 276 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQS 446
P+SPLY + A L+P++ + FN P + LA P + A S++
Sbjct: 243 PDSPLYYRRATIASDLRPSVYQHPQLYDFNRPESLSGQLDDESLARMPYSPNAVSRN 299
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,524
Number of Sequences: 5004
Number of extensions: 48442
Number of successful extensions: 195
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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