Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0289
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 135 3e-32
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 71 8e-13
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 71 8e-13
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 57 1e-08
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 52 3e-07
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 40 0.001
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 40 0.002
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 39 0.004
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 39 0.004
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 38 0.005
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 36 0.022
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 29 2.5
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 29 3.3
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 135 bits (326), Expect = 3e-32
Identities = 72/132 (54%), Positives = 84/132 (63%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
+E+ R P+SPLYS K+FE L L NL +GVY MGFN PSKIQETALP LLADPP NMIA
Sbjct: 88 VEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIA 147
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFVLK*S*SM 614
QSQSGTGKTAAFVL MLSRVD+ K + L P + K+ + +
Sbjct: 148 QSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKHCPHIKINY 207
Query: 615 QLEGKNFPRGSK 650
+ G FPRG K
Sbjct: 208 AVRGNQFPRGQK 219
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/77 (44%), Positives = 54/77 (70%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK LL G++ GF+ PS IQE ++P LA ++++A++++GTGKTAA+++ +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAG--RDILARAKNGTGKTAAYLVPLL 106
Query: 486 SRVDSNKNILKYCVLVP 536
R D+ KN ++ VLVP
Sbjct: 107 ERTDTTKNCIQALVLVP 123
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 70.9 bits (166), Expect = 8e-13
Identities = 34/77 (44%), Positives = 54/77 (70%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK LL G++ GF+ PS IQE ++P LA ++++A++++GTGKTAA+++ +L
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAG--RDILARAKNGTGKTAAYLVPLL 106
Query: 486 SRVDSNKNILKYCVLVP 536
R D+ KN ++ VLVP
Sbjct: 107 ERTDTTKNCIQALVLVP 123
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F +L L P LL+G+ GF PS IQ A+P L ++IAQ++SGTGKT F + L
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIP--LGRCGLDLIAQAKSGTGKTCVFSVIAL 72
Query: 486 SRVDSNKNILKYCVLVP 536
V + N ++ +L P
Sbjct: 73 ENVITESNCIQIIILTP 89
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 52.8 bits (121), Expect = 2e-07
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 20/89 (22%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETAL-PTLLADPP------------------ 419
V++F+ ++LK LL+G+YA GF PS IQ+ A+ P P
Sbjct: 62 VESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQEFSPSHVCYNQLNLTKNHYVLS 121
Query: 420 -QNMIAQSQSGTGKTAAFVLAMLSRVDSN 503
+++IAQ+QSGTGKTA F +++L +D+N
Sbjct: 122 ARDVIAQAQSGTGKTATFAISILQEIDTN 150
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVLA L
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDIICQAKSGMGKTAVFVLATL 106
Query: 486 SR---VDSNKNILKYC 524
+ VD ++L C
Sbjct: 107 QQLEPVDGQVSVLVMC 122
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVLA L
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG--MDIICQAKSGMGKTAVFVLATL 106
Query: 486 SR---VDSNKNILKYC 524
+ VD ++L C
Sbjct: 107 QQLEPVDGQVSVLVMC 122
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +3
Query: 357 GFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVP 536
GF PS IQ+ A+ +L +++IAQ+QSGTGKTA F +++L +D+ + VL P
Sbjct: 16 GFEKPSAIQQRAIKPILKG--RDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSP 73
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/63 (36%), Positives = 41/63 (65%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE + L LL V G+ P+ +Q+ A+P + ++++A +Q+G+GKTAAF++ +L
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAIP--IVKGKRDLMACAQTGSGKTAAFLIPIL 934
Query: 486 SRV 494
SR+
Sbjct: 935 SRI 937
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/70 (30%), Positives = 45/70 (64%)
Frame = +3
Query: 279 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 458
N+P+ + +FE +L L V + P+ +Q+ ++P ++A ++++A +Q+G+GK
Sbjct: 704 NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAG--RDVMACAQTGSGK 761
Query: 459 TAAFVLAMLS 488
TAAF+L +++
Sbjct: 762 TAAFLLPVMT 771
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/64 (31%), Positives = 41/64 (64%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ +F L L+ + G+ P+ +Q+ ALP ++A ++++A +Q+G+GKTAA++L
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAG--RDLMACAQTGSGKTAAYML 535
Query: 477 AMLS 488
+L+
Sbjct: 536 PVLT 539
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 482
+F L L L+ AMG P++IQ +P +L ++ I +++G+GKTAAF L +
Sbjct: 8 SFAGLGLNKWLVSQCVAMGIKKPTEIQLNCVPPILQG--RDCIGCAKTGSGKTAAFALPI 65
Query: 483 LSRVDSNKNILKYCVLVP 536
L ++ + + VL P
Sbjct: 66 LQKLCDDPYGIFAVVLTP 83
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
F + P L++ + MG P IQE ALP++ + ++++ +S++GTGK+ F+L
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSH--KSLLIKSETGTGKSLVFLL 216
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/65 (27%), Positives = 41/65 (63%)
Frame = +3
Query: 291 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 470
+ ++ ++ + ++L+ V +G+ P+ IQ A+P L + +++I +++G+GKTAAF
Sbjct: 98 FPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQN--RDIIGVAETGSGKTAAF 155
Query: 471 VLAML 485
+ +L
Sbjct: 156 AIPLL 160
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/66 (28%), Positives = 40/66 (60%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V +F L L+ ++LK + A+ + P+ IQ +P ++ ++I +Q+G+GKT A++
Sbjct: 377 VYSFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHR--HHVICAAQTGSGKTLAYLA 434
Query: 477 AMLSRV 494
++ R+
Sbjct: 435 PLVHRL 440
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 339 KGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
+ V +GF P+ IQ + +P L +++ A + +GTGKTAAF+L +L R+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMG--KDVCACAATGTGKTAAFMLPILERL 72
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/61 (27%), Positives = 37/61 (60%)
Frame = +3
Query: 279 NSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 458
N+P+ + +FE +L L V + P+ +Q+ ++P ++A ++++A +Q+G+GK
Sbjct: 127 NNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAG--RDVMACAQTGSGK 184
Query: 459 T 461
T
Sbjct: 185 T 185
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 31.9 bits (69), Expect = 0.47
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
I++ P P S F ++ + + + P++IQ ALP L+ +++I
Sbjct: 505 IKVSGAMPARPCIS---FAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSG--RDIIG 559
Query: 435 QSQSGTGKTAAFVLAMLSRV 494
+++G+GKTAAF+ L +
Sbjct: 560 IAKTGSGKTAAFLWPALVHI 579
>SB_6602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 511 IFLLESTLLNIAKTKAAVFPVPDCDWAI 428
I+ +E+T N +A +PVPD DW I
Sbjct: 565 IYDIEATFANFTCPEAFGYPVPDVDWVI 592
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +3
Query: 420 QNMIAQSQSGTGKTAAFVLAMLSRVDSNK 506
+++I Q+++GTGKT +F L ++ ++ K
Sbjct: 111 EDVIGQARTGTGKTLSFALPLVEKLQDGK 139
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/28 (32%), Positives = 23/28 (82%)
Frame = +3
Query: 420 QNMIAQSQSGTGKTAAFVLAMLSRVDSN 503
++++A +++G+GKTAAF++ M ++ ++
Sbjct: 319 KDVVAMARTGSGKTAAFLIPMFEKLQTH 346
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAKFC 592
P VL L PT ELA Q EVA + K C
Sbjct: 133 PIVLVLCPTRELAQQVQEVAYSVGKHC 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,977
Number of Sequences: 59808
Number of extensions: 333155
Number of successful extensions: 733
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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