Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0289
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr... 116 2e-26
AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical ... 70 1e-12
AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical... 70 2e-12
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 65 4e-11
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 65 4e-11
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 52 5e-07
AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved ger... 50 1e-06
U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical p... 49 3e-06
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 48 8e-06
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 48 8e-06
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 47 1e-05
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 47 1e-05
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 47 1e-05
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 47 1e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 47 1e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 47 1e-05
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 47 1e-05
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 46 2e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 44 1e-04
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 44 1e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 44 1e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 44 1e-04
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 44 1e-04
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 42 3e-04
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 42 4e-04
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 40 0.001
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 40 0.002
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 37 0.011
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 37 0.011
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 35 0.044
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.72
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 29 2.9
AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical... 29 3.8
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.1
>Z50071-3|CAA90407.1| 613|Caenorhabditis elegans Hypothetical
protein T07D4.4c protein.
Length = 613
Score = 116 bits (278), Expect = 2e-26
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
+++QR+ P SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 194 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 253
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFV 593
Q+QSGTGKTAAFVL ML R+D N + L P + ++ ++++K F+
Sbjct: 254 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 306
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELS 637
PQ +CL+PT ELA Q GEV KM KF +K+ YA++G ++
Sbjct: 280 PQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMA 321
>Z50071-2|CAA90406.1| 638|Caenorhabditis elegans Hypothetical
protein T07D4.4b protein.
Length = 638
Score = 116 bits (278), Expect = 2e-26
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
+++QR+ P SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 219 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 278
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFV 593
Q+QSGTGKTAAFVL ML R+D N + L P + ++ ++++K F+
Sbjct: 279 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 331
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELS 637
PQ +CL+PT ELA Q GEV KM KF +K+ YA++G ++
Sbjct: 305 PQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMA 346
>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
protein T07D4.4a protein.
Length = 1022
Score = 116 bits (278), Expect = 2e-26
Identities = 54/113 (47%), Positives = 77/113 (68%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
+++QR+ P SPLYS+ +F L LKP +LK + M F P++IQETALP LL +PP N+IA
Sbjct: 603 VDVQRQDPKSPLYSISSFRELRLKPEVLKALDTMNFQFPTRIQETALPLLLMEPPSNLIA 662
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFV 593
Q+QSGTGKTAAFVL ML R+D N + L P + ++ ++++K F+
Sbjct: 663 QAQSGTGKTAAFVLTMLCRIDVNLMCPQCICLAPTLELAKQIGEVVEKMGKFI 715
Score = 50.8 bits (116), Expect = 8e-07
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELS 637
PQ +CL+PT ELA Q GEV KM KF +K+ YA++G ++
Sbjct: 689 PQCICLAPTLELAKQIGEVVEKMGKFIDNLKIHYAIKGGNMA 730
>AC024844-2|AAK29954.2| 399|Caenorhabditis elegans Hypothetical
protein Y65B4A.6 protein.
Length = 399
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/80 (41%), Positives = 54/80 (67%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ TF+ + L+ +LL+G+YA GF PS IQ+ A+P +L +++IAQ+QSGTGKTA F +
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAIL--KARDVIAQAQSGTGKTATFSI 82
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++L +D+ + +L P
Sbjct: 83 SVLQSLDTQVRETQALILSP 102
>AF039720-12|AAB96704.1| 399|Caenorhabditis elegans Hypothetical
protein F33D11.10 protein.
Length = 399
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/80 (41%), Positives = 54/80 (67%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ TF+ + L+ +LL+G+YA GF PS IQ+ A+P +L +++IAQ+QSGTGKTA F +
Sbjct: 25 IPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAIL--KARDVIAQAQSGTGKTATFSI 82
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++L +D+ + +L P
Sbjct: 83 SVLQSLDTQVRETQALILSP 102
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V++F+ + LK LL+G+Y GF PS IQ+ A+ +++IAQ+QSGTGKTA F +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTG--KDVIAQAQSGTGKTATFSV 85
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++L R+D ++ V+ P
Sbjct: 86 SILQRIDHEDPHVQALVMAP 105
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 65.3 bits (152), Expect = 4e-11
Identities = 32/80 (40%), Positives = 51/80 (63%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V++F+ + LK LL+G+Y GF PS IQ+ A+ +++IAQ+QSGTGKTA F +
Sbjct: 28 VESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTG--KDVIAQAQSGTGKTATFSV 85
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++L R+D ++ V+ P
Sbjct: 86 SILQRIDHEDPHVQALVMAP 105
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 482
+FE ++L +LK G++ P+ IQ+ +P L +++ A + +GTGKTAAFVL +
Sbjct: 149 SFEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTG--KDICACAATGTGKTAAFVLPI 206
Query: 483 LSRV---DSNKNILKYCVLVPHMN*PYKLVKLLQKWQNFV 593
L R+ + + VLVP ++ ++ +K F+
Sbjct: 207 LERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRKLSTFI 246
>AC006605-1|AAK85443.1| 430|Caenorhabditis elegans Conserved
germline helicase protein1 protein.
Length = 430
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/77 (31%), Positives = 46/77 (59%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE L +LL G++ G+ PS IQE ++ L Q+++A++++GTGKT A+ + ++
Sbjct: 45 FEDFCLGRDLLMGIFEKGWEKPSPIQEASIGVALTG--QDILARAKNGTGKTGAYCIPVI 102
Query: 486 SRVDSNKNILKYCVLVP 536
++ ++ V+VP
Sbjct: 103 EKIQPALKAIQAMVIVP 119
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEEL 634
Q + + PT ELA+QT ++ +++K ++K+ G +L
Sbjct: 113 QAMVIVPTRELALQTSQICVELSKHI-QLKVMVTTGGTDL 151
>U13876-12|AAA21169.1| 363|Caenorhabditis elegans Hypothetical
protein F57B9.3 protein.
Length = 363
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +3
Query: 315 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
+ LK LL+G+Y GF PS IQ++A+ +++ QSQ+G+GKT ++ +L +
Sbjct: 1 MELKEELLRGIYGFGFEKPSAIQKSAVAPCTTG--KDVTIQSQAGSGKTVISLIDILQGI 58
Query: 495 DSNKNILKYCVLVP 536
D L+ +L P
Sbjct: 59 DCEDAHLQVILLAP 72
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
IE+ + + + S TFE+L + L+ + F+ PS +Q A+P L ++M+
Sbjct: 7 IEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG--RDMLV 64
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVP 536
Q++SGTGKT F + + +DS + ++ ++ P
Sbjct: 65 QAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTP 98
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
IE+ + + + S TFE+L + L+ + F+ PS +Q A+P L ++M+
Sbjct: 7 IEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLG--RDMLV 64
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNILKYCVLVP 536
Q++SGTGKT F + + +DS + ++ ++ P
Sbjct: 65 QAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTP 98
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/67 (29%), Positives = 46/67 (68%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTAAF+
Sbjct: 137 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTAAFL 194
Query: 474 LAMLSRV 494
L ++ +
Sbjct: 195 LPIIQHI 201
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 509 YPQVLCLSPTYELAIQTGEVAAKMA 583
YP L LSPT ELAIQ + A K +
Sbjct: 222 YPCALVLSPTRELAIQIHKEATKFS 246
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/67 (29%), Positives = 46/67 (68%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTAAF+
Sbjct: 121 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTAAFL 178
Query: 474 LAMLSRV 494
L ++ +
Sbjct: 179 LPIIQHI 185
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 509 YPQVLCLSPTYELAIQTGEVAAKMA 583
YP L LSPT ELAIQ + A K +
Sbjct: 206 YPCALVLSPTRELAIQIHKEATKFS 230
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/67 (29%), Positives = 46/67 (68%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+++ F P +++ V G++ P+ +Q+ ++PTLLA+ +++++ +Q+G+GKTAAF+
Sbjct: 118 AIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLAN--RDLMSCAQTGSGKTAAFL 175
Query: 474 LAMLSRV 494
L ++ +
Sbjct: 176 LPIIQHI 182
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 509 YPQVLCLSPTYELAIQTGEVAAKMA 583
YP L LSPT ELAIQ + A K +
Sbjct: 203 YPCALVLSPTRELAIQIHKEATKFS 227
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G++ + IQ+ ALP L +++A +Q+G+GKTAAF+L
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALP--LVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 480 MLSRVDSNKNI 512
+++R+ + N+
Sbjct: 399 IMTRLIDDNNL 409
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G++ + IQ+ ALP L +++A +Q+G+GKTAAF+L
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALP--LVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 480 MLSRVDSNKNI 512
+++R+ + N+
Sbjct: 399 IMTRLIDDNNL 409
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G++ + IQ+ ALP L +++A +Q+G+GKTAAF+L
Sbjct: 341 KTFAEANLTETMQKNVAHAGYSKTTPIQQYALP--LVHQGYDIMACAQTGSGKTAAFLLP 398
Query: 480 MLSRVDSNKNI 512
+++R+ + N+
Sbjct: 399 IMTRLIDDNNL 409
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 41/63 (65%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
++ + L ++ K + GFN P+ IQ +P ++ ++++A S++G+GKTAAFV+ ML
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG--KDVVAMSRTGSGKTAAFVIPML 83
Query: 486 SRV 494
++
Sbjct: 84 QKL 86
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELSQGF 646
+ L +SPT ELA+QT +V ++ +F ++ V G+++ + F
Sbjct: 95 RALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQF 137
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 41/63 (65%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
++ + L ++ K + GFN P+ IQ +P ++ ++++A S++G+GKTAAFV+ ML
Sbjct: 26 WQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDG--KDVVAMSRTGSGKTAAFVIPML 83
Query: 486 SRV 494
++
Sbjct: 84 QKL 86
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKFCPEIKLKYAVRGEELSQGF 646
+ L +SPT ELA+QT +V ++ +F ++ V G+++ + F
Sbjct: 95 RALMVSPTRELALQTFKVVKELGRF-TGLRCACLVGGDQIEEQF 137
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA FV+ L
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTAVFVITTL 100
Query: 486 SRVD 497
+++
Sbjct: 101 QQLE 104
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA FV+ L
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTAVFVITTL 100
Query: 486 SRVD 497
+++
Sbjct: 101 QQLE 104
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP +L+ + GF PS++Q +P + +++ Q++SG GKTA FV+ L
Sbjct: 42 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILG--MDVVCQAKSGMGKTAVFVITTL 99
Query: 486 SRVD 497
+++
Sbjct: 100 QQLE 103
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G+ + IQ+ LP L +++A +Q+G+GKTAAF+L
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLP--LIHQGHDIMACAQTGSGKTAAFLLP 609
Query: 480 MLSR-VDSN 503
+++R +D N
Sbjct: 610 IMARLIDEN 618
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G+ + IQ+ LP L +++A +Q+G+GKTAAF+L
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLP--LIHQGHDIMACAQTGSGKTAAFLLP 609
Query: 480 MLSR-VDSN 503
+++R +D N
Sbjct: 610 IMARLIDEN 618
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/71 (33%), Positives = 46/71 (64%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
K+F + ++ + V G+ + IQ+ LP L+AD ++++A +Q+G+GKTAAF+L
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLP-LVADG-KDILACAQTGSGKTAAFLLP 355
Query: 480 MLSRVDSNKNI 512
++SR+ K++
Sbjct: 356 IMSRLILEKDL 366
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/71 (33%), Positives = 46/71 (64%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
K+F + ++ + V G+ + IQ+ LP L+AD ++++A +Q+G+GKTAAF+L
Sbjct: 298 KSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLP-LVADG-KDILACAQTGSGKTAAFLLP 355
Query: 480 MLSRVDSNKNI 512
++SR+ K++
Sbjct: 356 IMSRLILEKDL 366
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF +L + K V G+ + IQ+ LP L +++A +Q+G+GKTAAF+L
Sbjct: 552 KTFSEANLGETMKKNVAHAGYTKTTPIQQYTLP--LIHQGHDIMACAQTGSGKTAAFLLP 609
Query: 480 MLSR-VDSN 503
+++R +D N
Sbjct: 610 IMARLIDEN 618
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
K+F L + L +G+ PSKIQ+ ALP L +++I +++G+GKT AF +
Sbjct: 44 KSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQG--KDVIGLAETGSGKTGAFAIP 101
Query: 480 MLSRVDSNKNILKYCVLVP 536
+L + + VL P
Sbjct: 102 VLQSLLDHPQAFFCLVLTP 120
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 297 VKTFE-ALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
V +FE A +++ + GF PS IQ P LL+ Q+ I SQ+G+GKT AF+
Sbjct: 82 VNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSG--QDCIGVSQTGSGKTLAFL 139
Query: 474 LAMLSRVDS 500
L L +D+
Sbjct: 140 LPALLHIDA 148
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/65 (26%), Positives = 41/65 (63%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
KTF L +LK + +G+ +++QE+ + L + +N++ ++++G+GKT AF++
Sbjct: 89 KTFADFGLDERILKSIGELGWEKANQVQESVISLALEN--KNIMGRARTGSGKTGAFLIP 146
Query: 480 MLSRV 494
++ ++
Sbjct: 147 LVQKL 151
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 303 TFEALHLK--PNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
TF +L K NLLK V +GF ++IQ ++ LL ++++A +++G+GKT AF+L
Sbjct: 67 TFASLEGKVNANLLKAVQGLGFTTMTEIQAKSIDPLLEG--KDVLASAKTGSGKTLAFLL 124
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/68 (29%), Positives = 40/68 (58%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
++ +E + + V +G+ P+ IQ A+P L + +++I +++G+GKTAAF+L
Sbjct: 300 LRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQN--RDVIGVAETGSGKTAAFLL 357
Query: 477 AMLSRVDS 500
+L + S
Sbjct: 358 PLLVWITS 365
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/66 (24%), Positives = 41/66 (62%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ F L L + + + G++ P+ +Q+ ++P L +++++ +Q+G+GKTAAF++
Sbjct: 165 ISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGG--RDLMSCAQTGSGKTAAFLV 222
Query: 477 AMLSRV 494
+++ +
Sbjct: 223 PLVNAI 228
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 503 QEYPQVLCLSPTYELAIQTGEVAAKMAKFCP 595
++YP L LSPT EL++Q + K A P
Sbjct: 248 KQYPSALVLSPTRELSLQIFNESRKFAYRTP 278
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/66 (24%), Positives = 39/66 (59%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+KT+ + ++ + ++ P+ IQ A+P++++ +++I +++G+GKT AF+L
Sbjct: 303 IKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSG--RDVIGIAKTGSGKTLAFLL 360
Query: 477 AMLSRV 494
M +
Sbjct: 361 PMFRHI 366
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +3
Query: 321 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
L P +L+ + + +N IQ +P +L +++ Q+++ GKTAAF L ++ ++
Sbjct: 388 LHPTILETLKRIKYNNVRTIQGAMIPQVLDG--HDVLGQAETSAGKTAAFGLPIIDKI 443
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/71 (30%), Positives = 40/71 (56%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
++KTF L P LL+ V+ + + + +Q + LL +++ +S +G+GKT AFV
Sbjct: 9 ALKTFRE-KLGPELLE-VFDKSYKSFTDVQVLSGTHLLN--LSDVVVESPTGSGKTLAFV 64
Query: 474 LAMLSRVDSNK 506
L M+ + + K
Sbjct: 65 LPMMRMIQNAK 75
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/81 (20%), Positives = 39/81 (48%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+ K F L + + + + M + +Q +P +L +++ +++GTGKT AF
Sbjct: 87 TTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEG--SDILGCARTGTGKTLAFA 144
Query: 474 LAMLSRVDSNKNILKYCVLVP 536
+ +L ++ + + +L P
Sbjct: 145 IPILQKLSVDPYGIYALILTP 165
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/81 (20%), Positives = 39/81 (48%)
Frame = +3
Query: 294 SVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFV 473
+ K F L + + + + M + +Q +P +L +++ +++GTGKT AF
Sbjct: 87 TTKKFSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEG--SDILGCARTGTGKTLAFA 144
Query: 474 LAMLSRVDSNKNILKYCVLVP 536
+ +L ++ + + +L P
Sbjct: 145 IPILQKLSVDPYGIYALILTP 165
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 357 GFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
G P+ IQ +P L+ ++MI + +G+GKT FVL ++
Sbjct: 209 GIVTPTAIQIQGIPVALSG--RDMIGIASTGSGKTMTFVLPLV 249
>AF022973-11|AAK84524.3| 560|Caenorhabditis elegans Hypothetical
protein F25G6.1 protein.
Length = 560
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 30 RCSIK*LILLSHKYG*PVGTKGR 98
RC L+SHKYG PV TK +
Sbjct: 375 RCDYHIFSLMSHKYGKPVATKSK 397
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 187 GYQVHHQNLFLDYVF 143
GY+ HH NLF+ Y F
Sbjct: 650 GYETHHANLFIKYTF 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,867,540
Number of Sequences: 27780
Number of extensions: 263749
Number of successful extensions: 751
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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