Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0289
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       45   7e-07
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.16 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.48 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 44.8 bits (101), Expect = 7e-07
 Identities = 23/78 (29%), Positives = 48/78 (61%)
 Frame = +3

Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
           I++     N P   +++FEA  L+  +L  +   G+  P+ +Q+ ALP ++    ++++A
Sbjct: 182 IQVNVSGDNVP-QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNG--RDLMA 238

Query: 435 QSQSGTGKTAAFVLAMLS 488
            +Q+G+GKTAAF + +++
Sbjct: 239 CAQTGSGKTAAFAVPIIN 256



 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 512 PQVLCLSPTYELAIQTGEVAAKMA 583
           PQV+ +SPT EL IQ  +   K +
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFS 297


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 249 TRIEIQRKXPNSPLYSVKTFEALHLKPNLL 338
           +R EI R   NSPL  ++  + LHL+ N +
Sbjct: 220 SRNEITRLQENSPLLDLRQLQELHLQRNAI 249


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 74  LASGDKRQKSWRFQIKLQGWAWIKNIIKKQILMMYL 181
           L S DK+Q +WR    L GW+    I    I+M+ +
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLCISLVYIIMLII 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,474
Number of Sequences: 438
Number of extensions: 3150
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)