Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0289
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 79 3e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 73 2e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 73 2e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 70 2e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 70 2e-12
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 69 4e-12
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 60 1e-09
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 59 3e-09
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 58 4e-09
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 58 7e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 57 1e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 56 2e-08
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 53 2e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 51 6e-07
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 51 6e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 2e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 49 3e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 48 4e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 5e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 47 1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 47 1e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 45 4e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 45 5e-05
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 44 9e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 1e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 1e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 3e-04
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 41 6e-04
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 41 6e-04
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 41 6e-04
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 41 6e-04
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 41 6e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 41 8e-04
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 40 0.001
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 40 0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 39 0.003
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 38 0.004
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 38 0.004
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 38 0.006
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 36 0.024
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 36 0.024
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 35 0.041
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 35 0.055
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 35 0.055
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 34 0.072
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.22
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 33 0.22
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 31 0.51
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 31 0.67
At5g15570.1 68418.m01823 expressed protein hypothetical protein ... 31 0.89
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin... 30 1.2
At1g50360.1 68414.m05645 myosin family protein contains Pfam pro... 30 1.6
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 29 3.6
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 28 4.8
At5g41190.1 68418.m05006 expressed protein ; expression support... 27 8.3
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 27 8.3
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 27 8.3
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 1/105 (0%)
Frame = +3
Query: 279 NSPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 455
++P S FE L+L P L+KG+Y M F PSKIQ +LP ++ P +++IAQ+ +G+G
Sbjct: 84 DTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSG 143
Query: 456 KTAAFVLAMLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQKWQNF 590
KT FVL MLSRVD + + P + +++LQK F
Sbjct: 144 KTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKF 188
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/77 (42%), Positives = 52/77 (67%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 486 SRVDSNKNILKYCVLVP 536
++D N N+++ +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKF 589
Q + L PT ELA+QT +V +++K+
Sbjct: 194 QAMILVPTRELALQTSQVCKELSKY 218
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/77 (42%), Positives = 52/77 (67%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK +LLKG+Y GF PS IQE ++P L +++A++++GTGKT AF + +L
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPVL 183
Query: 486 SRVDSNKNILKYCVLVP 536
++D N N+++ +LVP
Sbjct: 184 EKIDPNNNVIQAMILVP 200
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKF 589
Q + L PT ELA+QT +V +++K+
Sbjct: 194 QAMILVPTRELALQTSQVCKELSKY 218
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/77 (40%), Positives = 52/77 (67%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 486 SRVDSNKNILKYCVLVP 536
++D + N+++ ++VP
Sbjct: 191 EKIDQDNNVIQAVIIVP 207
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/77 (40%), Positives = 52/77 (67%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK LL G+Y GF PS IQE ++P L ++++A++++GTGKTAAF + +L
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTG--RDILARAKNGTGKTAAFCIPVL 190
Query: 486 SRVDSNKNILKYCVLVP 536
++D + N+++ ++VP
Sbjct: 191 EKIDQDNNVIQAVIIVP 207
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/77 (40%), Positives = 50/77 (64%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
FE LK +LL+G+Y GF PS IQE ++P L +++A++++GTGKT AF + L
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTG--SDILARAKNGTGKTGAFCIPTL 213
Query: 486 SRVDSNKNILKYCVLVP 536
++D N+++ +LVP
Sbjct: 214 EKIDPENNVIQAVILVP 230
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 515 QVLCLSPTYELAIQTGEVAAKMAKF 589
Q + L PT ELA+QT +V +++K+
Sbjct: 224 QAVILVPTRELALQTSQVCKELSKY 248
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/91 (35%), Positives = 54/91 (59%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAM 482
+F+A+ L+P+LL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F +
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKG--LDVIQQAQSGTGKTATFCSGV 99
Query: 483 LSRVDSNKNILKYCVLVPHMN*PYKLVKLLQ 575
L ++D + + VL P ++ K+++
Sbjct: 100 LQQLDISLVQCQALVLAPTRELAQQIEKVMR 130
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/92 (34%), Positives = 54/92 (58%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 480 MLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQ 575
+L ++D + + VL P ++ K+++
Sbjct: 97 VLQQLDFSLIQCQALVLAPTRELAQQIEKVMR 128
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/80 (36%), Positives = 51/80 (63%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+ +F + +K ++L+GVY GF PS IQ+ A+ +L +++IAQ+QSGTGKT+ L
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQG--RDVIAQAQSGTGKTSMIAL 91
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++ VD++ ++ +L P
Sbjct: 92 SVCQVVDTSSREVQALILSP 111
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/92 (34%), Positives = 53/92 (57%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
++F+A+ L+ NLL+G+YA GF PS IQ+ + ++I Q+QSGTGKTA F
Sbjct: 39 ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSG 96
Query: 480 MLSRVDSNKNILKYCVLVPHMN*PYKLVKLLQ 575
+L ++D + VL P ++ K+++
Sbjct: 97 VLQQLDYALLQCQALVLAPTRELAQQIEKVMR 128
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = +3
Query: 282 SPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKT 461
SPL+S K+FE L L +LL + GF+ P+ +Q A+P ++ + + QS +G+GKT
Sbjct: 104 SPLFSAKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG--HDAVIQSYTGSGKT 161
Query: 462 AAFVLAMLSRV 494
A++L +LS +
Sbjct: 162 LAYLLPILSEI 172
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/80 (35%), Positives = 51/80 (63%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K+F+ + + +L+GVY G+ PS+IQ+ AL +L +++IAQ+QSGTGKT+ +
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKG--RDVIAQAQSGTGKTSMIAI 78
Query: 477 AMLSRVDSNKNILKYCVLVP 536
++ V+ + ++ VL P
Sbjct: 79 SVCQIVNISSRKVQVLVLSP 98
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Frame = +3
Query: 258 EIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 437
E+ RK FE+L+L PN+ + G+ P+ IQ +P +L+ +++A
Sbjct: 14 ELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG--VDVVAM 71
Query: 438 SQSGTGKTAAFVLAMLSRV 494
+++G+GKTAAF++ ML ++
Sbjct: 72 ARTGSGKTAAFLIPMLEKL 90
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 486 SRVDSNKNILKYCVL 530
+++ + + VL
Sbjct: 106 QQIEPSPGQVSALVL 120
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +3
Query: 306 FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAML 485
F LKP LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTL 105
Query: 486 SRVDSNKNILKYCVL 530
+++ + + VL
Sbjct: 106 QQIEPSPGQVSALVL 120
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/73 (32%), Positives = 45/73 (61%)
Frame = +3
Query: 258 EIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQ 437
E ++K + + + KTFE+L L N K + MGF ++IQ A+P L+ ++++
Sbjct: 140 EEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMG--EDVLGA 197
Query: 438 SQSGTGKTAAFVL 476
+++G+GKT AF++
Sbjct: 198 ARTGSGKTLAFLI 210
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/73 (31%), Positives = 48/73 (65%)
Frame = +3
Query: 300 KTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLA 479
K+FE L L L++ + G P+ IQ++A+P +L ++++A++++G+GKT A++L
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG--KDVVARAKTGSGKTLAYLLP 103
Query: 480 MLSRVDSNKNILK 518
+L ++ S ++ K
Sbjct: 104 LLQKLFSADSVSK 116
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 48.4 bits (110), Expect = 4e-06
Identities = 26/63 (41%), Positives = 39/63 (61%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
VKTF L ++ L+K +G+ PSKIQ ALP L +++I +Q+G+GKT AF +
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEG--KDVIGLAQTGSGKTGAFAI 65
Query: 477 AML 485
+L
Sbjct: 66 PIL 68
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 282 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 458
S Y KT F+ L P LKG+ GF + +QE LP +L ++++A++++GTGK
Sbjct: 73 SDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQG--KDILAKAKTGTGK 130
Query: 459 TAAFVLAMLSRV 494
T AF+L + V
Sbjct: 131 TVAFLLPSIEAV 142
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
++++E L LLK V G+ PS IQ A+P L +++I +++G+GKTAAFVL
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIP--LGLQQRDVIGIAETGSGKTAAFVL 369
Query: 477 AMLSRV 494
ML+ +
Sbjct: 370 PMLAYI 375
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V TF + L P LL + G++ P+ IQ A+P L ++++A + +G+GKTA+F++
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTG--KSLLASADTGSGKTASFLV 166
Query: 477 AMLSR 491
++SR
Sbjct: 167 PIISR 171
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 282 SPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 458
S Y KT F+ L P LK + GF + +QE LP +L ++++A++++GTGK
Sbjct: 375 SDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQG--KDVLAKAKTGTGK 432
Query: 459 TAAFVLAMLSRV 494
T AF+L + V
Sbjct: 433 TVAFLLPAIEAV 444
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
VKTFE ++ + + P+ IQ ALP +L+ +++I +++G+GKTAAFVL
Sbjct: 227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSG--RDVIGIAKTGSGKTAAFVL 284
Query: 477 AMLSRV 494
M+ +
Sbjct: 285 PMIVHI 290
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 44.0 bits (99), Expect = 9e-05
Identities = 24/73 (32%), Positives = 41/73 (56%)
Frame = +3
Query: 276 PNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTG 455
P+S S FE L L ++ +G P+ +Q +P +LA ++++ +Q+G+G
Sbjct: 50 PSSDTTSATNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAG--RDVLGLAQTGSG 107
Query: 456 KTAAFVLAMLSRV 494
KTAAF L +L R+
Sbjct: 108 KTAAFALPILHRL 120
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKT-FEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMI 431
IE + + Y KT F+ L P LK + G+ + +QE LP +L ++++
Sbjct: 38 IEADKTRNANDSYLTKTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKG--KDVL 95
Query: 432 AQSQSGTGKTAAFVLAMLSRV 494
A++++GTGKT AF+L + V
Sbjct: 96 AKAKTGTGKTVAFLLPSIEVV 116
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +3
Query: 291 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 470
+ TF L+L LL+ +G+ P+ IQ +P L +++ A + +G+GKTAAF
Sbjct: 164 FHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTG--RDLCASAITGSGKTAAF 221
Query: 471 VLAMLSRV 494
L L R+
Sbjct: 222 ALPTLERL 229
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/69 (30%), Positives = 42/69 (60%)
Frame = +3
Query: 330 NLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSNKN 509
++L + +GF P+ IQ ALPTL ++ I +Q+G+GKT ++L + S ++ ++
Sbjct: 86 HILHRMEEIGFVFPTDIQREALPTLFTG--RDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 510 ILKYCVLVP 536
++ ++VP
Sbjct: 144 SVQAVIVVP 152
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 264 QRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 443
+++ P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 363 EKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDG--KDALVKAK 420
Query: 444 SGTGKTAAFVLAMLSRV 494
+GTGK+ AF+L + V
Sbjct: 421 TGTGKSMAFLLPAIETV 437
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/77 (27%), Positives = 43/77 (55%)
Frame = +3
Query: 264 QRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQ 443
+++ P+ +YS K F+ + P LK + A G +++Q+ L L ++ + +++
Sbjct: 316 EKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDG--KDALVKAK 373
Query: 444 SGTGKTAAFVLAMLSRV 494
+GTGK+ AF+L + V
Sbjct: 374 TGTGKSMAFLLPAIETV 390
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/72 (30%), Positives = 43/72 (59%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V TF + L L + + P+ +Q A+P LLA+ ++++A +Q+G+GKTAAF
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCF 207
Query: 477 AMLSRVDSNKNI 512
++S + ++++
Sbjct: 208 PIISGIMKDQHV 219
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/72 (30%), Positives = 43/72 (59%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V TF + L L + + P+ +Q A+P LLA+ ++++A +Q+G+GKTAAF
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAE--RDLMACAQTGSGKTAAFCF 207
Query: 477 AMLSRVDSNKNI 512
++S + ++++
Sbjct: 208 PIISGIMKDQHV 219
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAK 586
P +L LSPT ELA Q E A K +
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR 255
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAK 586
P +L LSPT ELA Q E A K +
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR 255
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+FEA P LL+ V + GF+AP+ IQ + P +A ++++A +++G+GKT +++
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWP--IAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 512 PQVLCLSPTYELAIQTGEVAAKMAK 586
P +L LSPT ELA Q E A K +
Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGR 255
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/86 (30%), Positives = 46/86 (53%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
I I+ N P V TF + L L + + P+ +Q A+P L A ++++A
Sbjct: 132 IPIETSGDNVPP-PVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAG--RDLMA 188
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNI 512
+Q+G+GKTAAF ++S + +++I
Sbjct: 189 CAQTGSGKTAAFCFPIISGIMKDQHI 214
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K F+ + N+L+ + +GF P+ IQ P L +++I +++G+GKT A++L
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLL 221
Query: 477 AMLSRVDSNKNI 512
L V + +
Sbjct: 222 PALVHVSAQPRL 233
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K F+ + N+L+ + +GF P+ IQ P L +++I +++G+GKT A++L
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKG--RDLIGIAETGSGKTLAYLL 221
Query: 477 AMLSRVDSNKNI 512
L V + +
Sbjct: 222 PALVHVSAQPRL 233
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/86 (29%), Positives = 46/86 (53%)
Frame = +3
Query: 255 IEIQRKXPNSPLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIA 434
I I+ N P V TF + L L + + P+ +Q A+P LL ++++A
Sbjct: 145 IPIETSGDNVPP-PVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEG--RDLMA 201
Query: 435 QSQSGTGKTAAFVLAMLSRVDSNKNI 512
+Q+G+GKTAAF ++S + ++++
Sbjct: 202 CAQTGSGKTAAFCFPIISGIMKDQHV 227
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 333 LLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
+L+ + +GF P+ IQ A+P LL+ + A + +G+GKT AF+ ML ++
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSG--RECFACAPTGSGKTFAFICPMLIKL 203
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 282 SPLYSVKTFEALHLKPNLLKGVYA-MGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGK 458
S L++ +F +L L L + MGF AP+ +Q A+P +L+ ++++ + +GTGK
Sbjct: 23 SGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSG--RDVLVNAPTGTGK 80
Query: 459 TAAFVLAMLSRVDSN 503
T A++ ++ + +
Sbjct: 81 TIAYLAPLIHHLQGH 95
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +3
Query: 291 YSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAF 470
+S KTF + +++K + F+ P+ IQ A ++ ++ I QSG+GKT A+
Sbjct: 371 FSRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDG--KSCIIADQSGSGKTLAY 428
Query: 471 VLAMLSRV 494
++ ++ R+
Sbjct: 429 LVPVIQRL 436
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 35.9 bits (79), Expect = 0.024
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K F+ + +L + G P+ IQ LP +LA ++MI + +G+GKT FVL
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAG--RDMIGIAFTGSGKTLVFVL 202
Query: 477 AML 485
M+
Sbjct: 203 PMI 205
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K + L +L + + + P IQ ALP +++ ++ I +++G+GKT FVL
Sbjct: 528 IKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSG--RDCIGVAKTGSGKTLGFVL 585
Query: 477 AMLSRV 494
ML +
Sbjct: 586 PMLRHI 591
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 35.1 bits (77), Expect = 0.041
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
+K F + LL+ + G P+ IQ LP +L+ ++MI + +G+GKT FVL
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSG--RDMIGIAFTGSGKTLVFVL 153
Query: 477 AML 485
M+
Sbjct: 154 PMI 156
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/44 (36%), Positives = 31/44 (70%)
Frame = +3
Query: 345 VYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
VY+ GF+APS IQ + P +A ++++A +++G+GKT +++
Sbjct: 244 VYSAGFSAPSPIQAQSWP--IAMQNRDIVAIAKTGSGKTLGYLI 285
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 321 LKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
L +L + + + P IQ ALP +++ ++ I +++G+GKT FVL ML +
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSG--RDCIGVAKTGSGKTLGFVLPMLRHI 458
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
VK+F + +L+ V GF P+ IQ P +A +++I +++G+GKT +++L
Sbjct: 98 VKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWP--MAMKGRDLIGIAETGSGKTLSYLL 155
Query: 477 AMLSRVDS 500
+ V++
Sbjct: 156 PAIVHVNA 163
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +3
Query: 315 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
L + P ++K + + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 109 LGISPEIVKALSSKGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 166
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 315 LHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRV 494
L + P ++K + G IQ+ L + ++MI ++++GTGKT AF + ++ ++
Sbjct: 121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI 178
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 303 TFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
TF++L L + MGF ++IQ ++ LL ++++ +++G+GKT AF++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEG--KDVLGAARTGSGKTLAFLI 145
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 423 NMIAQSQSGTGKTAAFVLAMLSRVDSNKNILKYCVL 530
++I Q++SG GKTA FVL+ L +++ + + VL
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL 37
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = +3
Query: 297 VKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVL 476
V+ F L + +G+ + + +Q A+P L ++++ +++G+GKT AFV+
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCG--RDILGAARTGSGKTLAFVI 127
Query: 477 AMLSRV 494
+L ++
Sbjct: 128 PILEKL 133
>At5g15570.1 68418.m01823 expressed protein hypothetical protein
F14P3.19 - Arabidopsis thaliana, EMBL:AC009755
Length = 381
Score = 30.7 bits (66), Expect = 0.89
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 372 SKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVDSN 503
S QETAL TL +++ Q GKTA F + M RV+SN
Sbjct: 61 SSFQETALETLT-----DVVIQYIQNIGKTAQFYVNMAGRVESN 99
>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
[Arabidopsis thaliana] GI:6491702; similar to myosin
GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
profiles: PF00063: myosin head (motor domain), PF00612:
IQ calmodulin-binding motif; identical to cDNA myosin
(ATM) GI:297068
Length = 1166
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 285 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 461
PLY + EA K N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 212 PLYGNRYIEAYRKKSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 263
Query: 462 AAFVLAM 482
+AM
Sbjct: 264 ETAKIAM 270
>At1g50360.1 68414.m05645 myosin family protein contains Pfam
profiles: PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif
Length = 1153
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 285 PLYSVKTFEALHLKPNLLKGVYAMGFNAPSKIQETALPTLLADPP-QNMIAQSQSGTGKT 461
PLY + EA + N VYA I +TA+ ++ D Q++I +SG GKT
Sbjct: 204 PLYGNRNIEAYRKRSNESPHVYA--------IADTAIREMIRDEVNQSIIISGESGAGKT 255
Query: 462 AAFVLAM 482
+AM
Sbjct: 256 ETAKIAM 262
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 25/34 (73%)
Frame = +3
Query: 390 ALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSR 491
A+P L ++++A + +G+GKTA+F++ ++SR
Sbjct: 3 AIPAALTG--KSLLASADTGSGKTASFLVPIISR 34
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 187 GYQVHHQNLFLDYVFYPSPALQLYL 113
GY H +NL+L Y F P+ +L YL
Sbjct: 397 GYCKHKENLYLVYDFMPNGSLDKYL 421
>At5g41190.1 68418.m05006 expressed protein ; expression supported
by MPSS
Length = 602
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 91 KAEELEISNKVAGLGLDKKHNQETDSDDVPDTPNAADTSLLMKIIRQ 231
K E+++ K+ G+D Q D DD D A S K +R+
Sbjct: 240 KKTEIKLEGKMVVEGVDASQGQYDDDDDASDWRPAVSRSTHSKYLRR 286
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 21/25 (84%)
Frame = +3
Query: 420 QNMIAQSQSGTGKTAAFVLAMLSRV 494
+++IA++++GTGKT AF + ++ R+
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRL 164
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 112 SNKVAGLGLDKKHNQET--DSDDVPDTPNAADTSLLMKIIRQGLVESK 249
SNK A G+ HNQ++ + ++V A + + IR G+V+ K
Sbjct: 243 SNKAADSGVVISHNQDSKMEENEVTRNRRAQQAAKFREYIRAGIVDGK 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,044,846
Number of Sequences: 28952
Number of extensions: 242427
Number of successful extensions: 761
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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