Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0287
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    76   2e-14
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    29   3.5  
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919...    28   6.1  
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    28   8.1  

>03_04_0157 +
           17791540-17791681,17792809-17792908,17793386-17793477,
           17793562-17793620,17794135-17795637,17796478-17796720,
           17796831-17797145,17797571-17797573,17798399-17798638,
           17798975-17799259,17799335-17799556,17800105-17800266,
           17800411-17800545,17802452-17802688,17802787-17802960,
           17803692-17803934
          Length = 1384

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
 Frame = +2

Query: 236 KNF*R-VLKKLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSL 412
           +NF R V+ +   ++     AI+  L WFAG QIRNVA++GGN+ T SPISDLNP+ M+ 
Sbjct: 359 QNFLRKVILERDSHEISSCEAILRQLKWFAGTQIRNVASVGGNICTASPISDLNPLWMAT 418

Query: 413 KVKLNLLSQENGHRTVLMDETFFTGYRK 496
                ++   N  RT+   + FF GYRK
Sbjct: 419 GATFEIIDVNNNIRTIPAKD-FFLGYRK 445



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 30/83 (36%), Positives = 43/83 (51%)
 Frame = +3

Query: 3   NKQRGYRPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTIT 182
           N  R YRP  ++ VL LK  +PNAK            KFK   Y ++I    VPEL+T+ 
Sbjct: 282 NGIRWYRPLKLKQVLHLKACYPNAKLIIGNSEVGVETKFKNAQYKVLISVTHVPELHTLK 341

Query: 183 ENEHGLTVGASVTLNDIEKTFRE 251
             E G+ +G+SV L  ++   R+
Sbjct: 342 VKEDGIHIGSSVRLAQLQNFLRK 364



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = +1

Query: 472 NFFHWV*KECRQTNEILLSIEIPFSTKFQYLKAIKQAKRREDDI 603
           +FF    K   + +EILLS+ +P++  F+++K  KQA RREDDI
Sbjct: 438 DFFLGYRKVDLKPDEILLSVILPWTRPFEFVKEFKQAHRREDDI 481


>07_01_1146 +
           10756897-10757065,10763869-10765521,10765638-10765900,
           10766057-10766266,10766818-10767036,10767379-10768344,
           10768575-10768670,10768772-10768870,10769349-10769538,
           10769623-10769855
          Length = 1365

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 269 PYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPI---SDLNPILMSLKVKLNL-LS 436
           P  + V   + E ++  A   +RN A+IGGN++        SD+  IL+     +NL +S
Sbjct: 339 PNGSVVFRKLAEHMSKVASPFVRNTASIGGNIILAHKYPFRSDIATILLGAAATVNLQVS 398

Query: 437 QENGHRTV 460
            +  H T+
Sbjct: 399 SKTLHVTL 406


>07_01_1149 +
           10789733-10791209,10791326-10791588,10791745-10791954,
           10792398-10792475,10792505-10792705,10792768-10792908,
           10794749-10795714,10797824-10797919,10798450-10798638,
           10798849-10798956
          Length = 1242

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 269 PYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPI---SDLNPILMSLKVKLNL 430
           P  + V   + E ++  A   +RN A+IGGN++        SD+  IL+     +NL
Sbjct: 224 PNGSVVFRKLAEHMSKVASPFVRNTASIGGNIILAHKYPFRSDIATILLGAAATVNL 280


>07_01_0464 -
           3504264-3504475,3504842-3505031,3505310-3505408,
           3505561-3505653,3505926-3506891,3507267-3507485,
           3508038-3508247,3508371-3508630,3508956-3510737,
           3510796-3511009
          Length = 1414

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +3

Query: 129 VYPIIIMPNCVPELNTITENEHGLTVGASVTLNDIEKTFR 248
           +Y   I    +PELN+++++  G+ +GA+++++ + +  R
Sbjct: 313 LYDRYIDLRAIPELNSVSKDVKGVGIGAAMSISQVIEILR 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,882,660
Number of Sequences: 37544
Number of extensions: 317807
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)