Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0287
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   2e-20
SB_52584| Best HMM Match : FAD_binding_5 (HMM E-Value=2.3e-09)         50   2e-06
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            32   0.51 
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         28   6.2  

>SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
 Frame = +2

Query: 260 KLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMS--LKVKLNLL 433
           +LP Y+TR  +AI+E+L WFAG+QIRNVA +GGN++T SPISDLNPI M+    +K+  L
Sbjct: 208 RLPEYQTRTYSAILEILRWFAGQQIRNVAGVGGNIITASPISDLNPIFMASGSTLKVASL 267

Query: 434 SQEN--GHRTVLMDETFFTGYRKNVVK 508
           +++N    R +  DE FF GYRK  +K
Sbjct: 268 AEDNTVQEREIKFDENFFLGYRKTALK 294



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/74 (40%), Positives = 41/74 (55%)
 Frame = +3

Query: 18  YRPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTITENEHG 197
           +RP++++ +  LK K P AK            KFK   YP++I P  +PEL ++ E   G
Sbjct: 127 FRPSSLKELCELKTKHPQAKLVIGNTELGIETKFKNQSYPVLIAPTHIPELTSVQETAEG 186

Query: 198 LTVGASVTLNDIEK 239
            T GASVTL  IEK
Sbjct: 187 FTFGASVTLATIEK 200



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/44 (47%), Positives = 32/44 (72%)
 Frame = +1

Query: 472 NFFHWV*KECRQTNEILLSIEIPFSTKFQYLKAIKQAKRREDDI 603
           NFF    K   ++NE+L+S+ +PF+ + +YL A KQA+RR+DDI
Sbjct: 283 NFFLGYRKTALKSNEVLVSVHVPFTKQNEYLFAFKQARRRDDDI 326


>SB_52584| Best HMM Match : FAD_binding_5 (HMM E-Value=2.3e-09)
          Length = 215

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/61 (36%), Positives = 40/61 (65%)
 Frame = +2

Query: 254 LKKLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVKLNLL 433
           L+KLP         +++ML+ +  KQ+R++ +I  NV+  +P SDLN +L++L  +LN++
Sbjct: 117 LEKLPELHAGPCKVLLQMLDHYGNKQVRHMFSISSNVLPAAPDSDLNVLLVALGAQLNII 176

Query: 434 S 436
           S
Sbjct: 177 S 177



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 39/78 (50%)
 Frame = +3

Query: 21  RPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTITENEHGL 200
           RP+++E  L L D++PNA+                  +  I+    VPELN +  NE  +
Sbjct: 39  RPSSLEQCLKLADEYPNARRVSGMIGAAISSSVPDDQHVAILSLAHVPELNAVDWNEQAV 98

Query: 201 TVGASVTLNDIEKTFREY 254
           T GASVT+  +E +  ++
Sbjct: 99  TFGASVTMATMESSLADH 116


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 275 KTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSL 412
           K+ V  AI E L   A   +RNV +I GN+M     SD    +M++
Sbjct: 485 KSPVFPAIAEHLKVVANTPVRNVGSIAGNMMLAHDHSDFPSDIMTI 530


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 266 PPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLN 394
           P Y+ +    IV + NWF G ++ +V  +   ++    +S+L+
Sbjct: 562 PGYRNQACIVIVGLCNWFTGAELSDV--LNATIICAESLSELH 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,388,689
Number of Sequences: 59808
Number of extensions: 352555
Number of successful extensions: 664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)