Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0287
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    94   7e-20

>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical
           protein F55B11.1 protein.
          Length = 1358

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 44/88 (50%), Positives = 61/88 (69%)
 Frame = +2

Query: 248 RVLKKLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVKLN 427
           +++K LP  +T VL  + EML+WFAG  +RNVA++ GN+ T SPISDLNPI M+    + 
Sbjct: 341 QLMKDLPREQTAVLKHVHEMLHWFAGIHVRNVASVAGNIATASPISDLNPIWMASNALVV 400

Query: 428 LLSQENGHRTVLMDETFFTGYRKNVVKQ 511
           L S+  G + V +DE FF GYRK V++Q
Sbjct: 401 LDSEARGEKRVHIDEKFFLGYRKTVIQQ 428



 Score = 35.5 bits (78), Expect = 0.036
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +3

Query: 18  YRPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTITENEHG 197
           Y+P + + +LSLK + P+A+            KF+    P +I P  V  L+       G
Sbjct: 264 YQPVSYDDLLSLKRELPHARLISGNSELAIELKFRFIDLPAVINPRQVKVLHEKHLENDG 323

Query: 198 LTVGASVTLNDIE 236
           + +G  ++L D++
Sbjct: 324 VYMGTGMSLTDMD 336



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 475 FFHWV*KECRQTNEILLSIEIPFSTKFQYLKAIKQAKRREDDI 603
           FF    K   Q +EI+ ++ +P   + ++  A KQA+RREDDI
Sbjct: 417 FFLGYRKTVIQQDEIIKAVIVPLLEENEHFAAYKQAQRREDDI 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,638
Number of Sequences: 27780
Number of extensions: 300882
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)