Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0287
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34900.1 68417.m04949 xanthine dehydrogenase, putative simila... 85 6e-17
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila... 83 2e-16
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ... 31 0.96
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ... 31 0.96
At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to... 31 0.96
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ... 29 2.9
At1g44180.1 68414.m05103 aminoacylase, putative / N-acyl-L-amino... 29 3.9
At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to a... 27 8.9
At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to e... 27 8.9
At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1) ide... 27 8.9
At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1) ide... 27 8.9
>At4g34900.1 68417.m04949 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990], from Calliphora vicina [SP|P08793];
contains Pfam profile PF02738 Aldehyde oxidase and
xanthine dehydrogenase, molybdopterin binding domain
Length = 1364
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/85 (47%), Positives = 56/85 (65%)
Frame = +2
Query: 242 F*RVLKKLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVK 421
F +V+K+ P ++T A +E L WFAG QIRNVA IGGN+ T SPISDLNP+ M+ + +
Sbjct: 343 FRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVACIGGNICTASPISDLNPLWMASRAE 402
Query: 422 LNLLSQENGHRTVLMDETFFTGYRK 496
+++ NG + + FF GYRK
Sbjct: 403 FRIINC-NGDVRSIPAKDFFLGYRK 426
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +3
Query: 18 YRPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTITENEHG 197
YRP +++ +L LK FP+AK + KR YP++I VPELN + N++G
Sbjct: 268 YRPVSLQNLLELKANFPDAKLLVGNTEVGIEMRLKRLQYPVLISAAQVPELNALNVNDNG 327
Query: 198 LTVGASVTLNDIEKTFRE 251
+ VG+++ L+++ + FR+
Sbjct: 328 IEVGSALRLSELLRLFRK 345
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +1
Query: 508 TNEILLSIEIPFSTKFQYLKAIKQAKRREDDI 603
+NEILLS+ +P++ +Y+K KQA RR+DDI
Sbjct: 431 SNEILLSVFLPWTRPLEYVKEFKQAHRRDDDI 462
>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990]; contains Pfam profile PF02738 Aldehyde
oxidase and xanthine dehydrogenase, molybdopterin
binding domain
Length = 1361
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/85 (45%), Positives = 55/85 (64%)
Frame = +2
Query: 242 F*RVLKKLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVK 421
F +++K+ P ++T A +E L WFAG QIRNVA IGGN+ T SPISDLNP+ M+ + +
Sbjct: 340 FRKIVKERPAHETSACKAFIEQLKWFAGTQIRNVACIGGNICTASPISDLNPLWMASRAE 399
Query: 422 LNLLSQENGHRTVLMDETFFTGYRK 496
++ NG + + FF GYRK
Sbjct: 400 FR-ITNCNGDVRSIPAKDFFLGYRK 423
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/78 (32%), Positives = 45/78 (57%)
Frame = +3
Query: 18 YRPTNIETVLSLKDKFPNAKXXXXXXXXXXXXKFKRCVYPIIIMPNCVPELNTITENEHG 197
YRP ++ +L LK +P+AK + KR Y ++I VPELN + N++G
Sbjct: 265 YRPVCLQNLLELKANYPDAKLLVGNTEVGIEMRLKRLQYQVLISVAQVPELNALNVNDNG 324
Query: 198 LTVGASVTLNDIEKTFRE 251
+ VG+++ L+++ + FR+
Sbjct: 325 IEVGSALRLSELLRLFRK 342
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +1
Query: 508 TNEILLSIEIPFSTKFQYLKAIKQAKRREDDI 603
+NEILLS+ +P++ +Y+K KQA RR+DDI
Sbjct: 428 SNEILLSVFLPWTRPLEYVKEFKQAHRRDDDI 459
>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 284 VLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSP---ISDLNPILMSLKVKLNLLSQENGHR 454
VL I + A + +RN IGGN+M SDL IL++ + + +++ +
Sbjct: 339 VLAKIATHMEKIANRFVRNTGTIGGNIMMAQRKQFPSDLATILVAAQATVKIMTSSSSQE 398
Query: 455 TVLMDE 472
++E
Sbjct: 399 QFTLEE 404
>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +2
Query: 284 VLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSP---ISDLNPILMSLKVKLNLLSQENGHR 454
VL I + A + +RN IGGN+M SDL IL++ + + +++ +
Sbjct: 339 VLAKIATHMEKIANRFVRNTGTIGGNIMMAQRKQFPSDLATILVAAQATVKIMTSSSSQE 398
Query: 455 TVLMDE 472
++E
Sbjct: 399 QFTLEE 404
>At3g43600.1 68416.m04639 aldehyde oxidase, putative identical to
gi: 3172025; identical to cDNA putative aldehyde oxidase
(AO3) mRNA, partial cds GI:2792303
Length = 1321
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 260 KLPPYKTRVLTAIVEMLNWFAGKQIRNVAAIGGNVMTGSP---ISDLNPILMSLKVKLNL 430
++ P ++ + + A + IRN +IGGN++ SD+ IL++ +N+
Sbjct: 308 RVSPGVEKIFGKLATHMEMIAARFIRNFGSIGGNLVMAQRKQFPSDMATILLAAGAFVNI 367
Query: 431 LSQENGHRTVLMDE 472
+S G + ++E
Sbjct: 368 MSSSRGLEKLTLEE 381
>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
GP:3172044:gnl:PID:d1029570:AB010080
Length = 1332
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 159 VPELNTITENEHGLTVGASVTL-NDIEKTFREY*RNYHHTKL 281
+PE++ I ++E G+ +GA+VT+ N I+ +E +Y K+
Sbjct: 275 IPEMSMIKKDEKGIEIGAAVTISNAIDALEKESKSSYVFKKM 316
>At1g44180.1 68414.m05103 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase,
ACY-1) [Homo sapiens] SWISS-PROT:Q03154
Length = 435
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 393 FKSDIGLPVITFPPMAATFLICFPANQFNISTIAVKTLVLY 271
F +G+PV+ F PM T ++ N+F T+ +K + +Y
Sbjct: 382 FIRTLGIPVLGFSPMINTPILVHDHNEFLKDTVFMKGIGVY 422
>At5g39290.1 68418.m04758 expansin, putative (EXP26) similar to
alpha-expansin 4 precursor GI:16923355 from [Cucumis
sativus]; alpha-expansin gene family, PMID:11641069
Length = 263
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 376 TARHYIPANGSNISDLFSSKPIQHF 302
TA ++ PAN S +DL+ + P +HF
Sbjct: 114 TATNFCPANYSKTTDLWCNPPQKHF 138
>At5g39270.1 68418.m04756 expansin, putative (EXP22) similar to
expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
gene family, PMID:11641069
Length = 261
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 376 TARHYIPANGSNISDLFSSKPIQHF 302
TA ++ PAN S +DL+ + P +HF
Sbjct: 112 TATNFCPANYSKTTDLWCNPPQKHF 136
>At2g25710.2 68415.m03082 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 317 FAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVKLNLLSQE 442
+ K+ +G NV G P + LN +L + + NLL +E
Sbjct: 230 YRSKKFNVSVGVGLNVDNGQPTTCLNAVLKGMAPESNLLKRE 271
>At2g25710.1 68415.m03081 holocarboxylase synthetase 1 (HCS1)
identical to holocarboxylase synthetase 1 (hcs1)
[Arabidopsis thaliana] GI:19698365
Length = 367
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 317 FAGKQIRNVAAIGGNVMTGSPISDLNPILMSLKVKLNLLSQE 442
+ K+ +G NV G P + LN +L + + NLL +E
Sbjct: 230 YRSKKFNVSVGVGLNVDNGQPTTCLNAVLKGMAPESNLLKRE 271
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,135
Number of Sequences: 28952
Number of extensions: 274797
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -